View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11895_low_24 (Length: 227)
Name: NF11895_low_24
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 7333932 - 7333844
Alignment:
| Q |
18 |
aacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7333932 |
aacacgcttctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
7333844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 7299744 - 7299832
Alignment:
| Q |
18 |
aacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacactctttcaaagtttctctctcaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7299744 |
aacacgctcctccgacaataacagacaaaccaagtaccctatggtccccaacattcttccacacactctttgaaagtttctctctcaca |
7299832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 7333804 - 7333733
Alignment:
| Q |
146 |
catttttcatcaccaaaatctcacaaacaacaaagccaaataa-acaagttttttcaccgacccctttgctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
7333804 |
catttttcatcaccaaaatctcacaaacaacaaagccaaaaaacacaagttttttcaccgacccttttgctt |
7333733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 7299872 - 7299942
Alignment:
| Q |
146 |
catttttcatcaccaaaatctcacaaacaacaaagccaaataa-acaagttttttcaccgacccctttgctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||| ||||||| |
|
|
| T |
7299872 |
catttttcatcaccaaaatctcacaaacaacaaagccaaaaaacacaag-tttttcacctacccttttgctt |
7299942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7340694 - 7340629
Alignment:
| Q |
18 |
aacacgctcctccgacaataacagacaaaccaagtaccctatggtccacaacattcttccacacac |
83 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||| || |||||||| | ||||||| |||||||||| |
|
|
| T |
7340694 |
aacatgctcctctgacaataacagacgaaccaaatatcctatggttcccaacattattccacacac |
7340629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University