View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11895_low_3 (Length: 753)
Name: NF11895_low_3
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Complemental strand, 35598062 - 35597354
Alignment:
| Q |
1 |
taataataaagggaacaaaggaaagagagnnnnnnngagattaatgattctacataccagccaagtgagtagtgtggtgagatctagtgactgatcacca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35598062 |
taatcataaagggaacaaaggaaagagagaaaaaa-gagattaatgattctacataccagccaagtgagtagtgtggtgagatctagtgactgatcacca |
35597964 |
T |
|
| Q |
101 |
ggaagagaaagtagtgggtgagagaaaacatta----tgatcaaaggtgggaggtctctatatatgtgctgctgatttcattaatccttctttaaaaagt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35597963 |
ggaagagaaagtagtgggtgagagaaaacattaattatgatcaaaggtgggaggtctctatatatgtgctgctgatttcattaatccttctttaaaaagt |
35597864 |
T |
|
| Q |
197 |
aggttatggtagtagtaaaaaagtttaatttactcttaagattcacatggtacatgtggtcctactcataatggaatttttgtgtattaatctttgcttt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35597863 |
aggttatggtagtagtaaaaaagtttaatttactcttaagattcacatggtacatgtggtcctactcataatggaatttttgtgtattaatctttgtttt |
35597764 |
T |
|
| Q |
297 |
ttgctaactttataggtatatgatacgatggtcggagtttgaaccacgaaccttatgtatataatgtattatttttatcaactgagttaaactcacggta |
396 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||| | |
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| T |
35597763 |
ttgctaac---------------tacgatggtcggagtttgaaccacgaatcttatatatataatgtgttatttttaccaactgagttaaactcacgatg |
35597679 |
T |
|
| Q |
397 |
atatgtgtatataacatctgatcttgctagtaagaaattaatttcgtagttttaagagacaaaatttaaattttaaatagaataattatagaaggatgac |
496 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35597678 |
atatatatatataacatctgatctcgctagtaagaatttaatttcgtagttttaagagacaaaatttaaattttaaatagaataattatagaaggatgac |
35597579 |
T |
|
| Q |
497 |
tagtttcacctgaattaatgtcggagatataaca-tgatctggtaggtagctaacttcaacgacttcnnnnnnnnccttctcaaaccctaatcatcgtca |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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|
| T |
35597578 |
tagtttcacctgaattaatgtcggagatataatattgacctggtaggtagctaacttcaac-acttcttttttttctttctcaaaccctaatcatcgtca |
35597480 |
T |
|
| Q |
596 |
cttttcttctttttaattttaattaacgaatatcatttattattatt---------aaaaataaaagaaaactgacttgttgggtgagattaaaatgtta |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35597479 |
cttttcttctttttaattttaattaacgaatatcatttattattattaaaaataaaaaaaataaaaaaaaactgacttgttgggtgagattaaaatgtta |
35597380 |
T |
|
| Q |
687 |
aagggtgaaataacaaggagatagat |
712 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
35597379 |
aagggtgaaataacaaggagatagat |
35597354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 20211721 - 20211671
Alignment:
| Q |
344 |
gaaccttatgtatataatgtattatttttatcaactgagttaaactcacgg |
394 |
Q |
| |
|
||||||||| ||||| ||| ||| ||||||||||||||||| ||||||||| |
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|
| T |
20211721 |
gaaccttatatatattatgcattgtttttatcaactgagttgaactcacgg |
20211671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 14681255 - 14681316
Alignment:
| Q |
332 |
agtttgaaccacgaaccttatgtatataatgtattatttttatcaactgagttaaactcacg |
393 |
Q |
| |
|
|||||||||| |||||||| | ||||| ||| ||||| |||| ||||| ||||||||||||| |
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|
| T |
14681255 |
agtttgaaccccgaaccttctatatattatgcattatctttaccaactaagttaaactcacg |
14681316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 2563988 - 2563927
Alignment:
| Q |
333 |
gtttgaaccacgaaccttatgtatataatgtattatttttatcaactgagttaaactcacgg |
394 |
Q |
| |
|
||||||||| ||||||||| ||||| || ||||||||||||||||||||||| ||||||| |
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|
| T |
2563988 |
gtttgaacctcgaaccttacatatattattcattatttttatcaactgagttaagctcacgg |
2563927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 29791834 - 29791775
Alignment:
| Q |
334 |
tttgaaccacgaaccttatgtatataatgtattatttttatcaactgagttaaactcacg |
393 |
Q |
| |
|
|||||||| | ||||||| ||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
29791834 |
tttgaacctcaaaccttacatatattatgtattgtttctatcaactgagttaaactcacg |
29791775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 48517736 - 48517670
Alignment:
| Q |
327 |
gtcggagtttgaaccacgaaccttatgtatataatgtattatttttatcaactgagttaaactcacg |
393 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| ||| ||| || |||||||||||||||||||||| |
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|
| T |
48517736 |
gtcggagtttgaactccgaaccttgtatatattatgcattgttcctatcaactgagttaaactcacg |
48517670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 47835738 - 47835777
Alignment:
| Q |
354 |
tatataatgtattatttttatcaactgagttaaactcacg |
393 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||| |
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| T |
47835738 |
tatattatgtattgtttttatcaactgagttaaactcacg |
47835777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 35527965 - 35527923
Alignment:
| Q |
345 |
aaccttatgtatataatgtattatttttatcaactgagttaaa |
387 |
Q |
| |
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|||||||| ||||| ||| |||||||||||||||||||||||| |
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|
| T |
35527965 |
aaccttatatatattatgcattatttttatcaactgagttaaa |
35527923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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