View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11895_low_6 (Length: 624)

Name: NF11895_low_6
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11895_low_6
NF11895_low_6
[»] chr1 (5 HSPs)
chr1 (1-606)||(36578935-36579542)
chr1 (308-381)||(45481487-45481560)
chr1 (325-378)||(50849084-50849137)
chr1 (329-381)||(10480708-10480760)
chr1 (305-345)||(45418054-45418094)
[»] chr5 (4 HSPs)
chr5 (303-378)||(23118040-23118115)
chr5 (324-381)||(8882409-8882466)
chr5 (329-381)||(7216798-7216850)
chr5 (318-374)||(18981193-18981249)
[»] chr8 (3 HSPs)
chr8 (318-381)||(35682696-35682759)
chr8 (320-378)||(18422459-18422517)
chr8 (303-351)||(44975202-44975250)
[»] chr4 (6 HSPs)
chr4 (305-376)||(7371539-7371610)
chr4 (328-386)||(39842026-39842084)
chr4 (318-359)||(42756110-42756151)
chr4 (304-352)||(36071167-36071215)
chr4 (318-374)||(45029609-45029665)
chr4 (304-352)||(54677248-54677296)
[»] chr3 (6 HSPs)
chr3 (312-359)||(47440766-47440813)
chr3 (318-376)||(47039426-47039484)
chr3 (318-359)||(17507703-17507744)
chr3 (325-382)||(26973354-26973411)
chr3 (329-381)||(28130949-28131001)
chr3 (318-382)||(53633621-53633685)
[»] chr7 (5 HSPs)
chr7 (320-382)||(7388045-7388107)
chr7 (320-382)||(36755008-36755069)
chr7 (320-382)||(36760805-36760866)
chr7 (318-378)||(8879751-8879811)
chr7 (324-376)||(34000261-34000313)
[»] chr6 (5 HSPs)
chr6 (304-374)||(29431460-29431530)
chr6 (318-383)||(31140816-31140881)
chr6 (324-376)||(6470626-6470678)
chr6 (305-353)||(9973240-9973288)
chr6 (304-384)||(28592677-28592757)
[»] chr2 (2 HSPs)
chr2 (312-352)||(4238782-4238822)
chr2 (330-382)||(5676732-5676784)


Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 36578935 - 36579542
Alignment:
Q  1 cagaagtggacatgaggcaacaaccaaagttgaatggagacggtggaggacatcgcctactcctcaaagaagttgttatatctgcaaggactctaacgct 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36578935 cagaagtggacatgaggcaacaaccaatgttgaatggaggcggtggaggacatcgcctactcctcaaataggttgttatatctgcaaggactctaacgct 36579034  T
Q  101 caagttagtgagagttttaggagagtctagaggtttgatcagagttgagaatgtacatttaactaaagttcaatgtccttttgtaggagacgttcatgaa 200  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  36579035 caagtcaatgagagttttaggagagtctagaggtttgatcagagttgagaatgtacctttaactaaagttcaatgtccttttgtaggagacgtgcatgaa 36579134  T
Q  201 ataatggttacgtgacaaaattactttgtagagtggatcccgacatgatttatatattatgtaccatctaattcgcattaaagggtcatgatannnnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||           
T  36579135 ataatggttacgtgacaaaattactttgtagagtggatcccgacatgatttgtatattacgtaccatctaattcgcatttaagggtcatgatattttttt 36579234  T
Q  301 ngggtggtgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggacagagagtcatgatttgata 400  Q
     ||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  36579235 tgggtggtgtccggagattgaatcccggaccttgcatatattatggattatcattaccatattagttaagctcacgaggacagagagtcatgatttgata 36579334  T
Q  401 atgaaaaatgatttct--gtgttgctattatagacaataaagctcattttgttggattgaaccttggtctagtccaaaacaattatatcgtgcttgtctt 498  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36579335 atgaaaaatgatttctttgtgttgctattattgacaataaagctcattttgttggattgaaccttggtctagtccaaaacaattatatcgtacttgtctt 36579434  T
Q  499 ttcaataattgagctattcttaacacaggaatgagctctattgtccaggctactgccaacacataatgttgcatgcacatcatctctggcctctggcctg 598  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36579435 ttcaataattgagctattcttaacacaggaatgagctttattgtccaggctactgccaacacataatgttgcatgcacatcatctctggcctctggcctg 36579534  T
Q  599 attttgct 606  Q
    ||||||||    
T  36579535 attttgct 36579542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 381
Target Start/End: Complemental strand, 45481560 - 45481487
Alignment:
Q  308 tgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    ||||||||| ||||| |||| ||||| ||||||||||| |||||| ||| || |||||||||||||||| ||||    
T  45481560 tgtccggagttcgaaccccggaccttgcatatattatgcattgtccttaccaaatgaattaagctcacggggac 45481487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 50849084 - 50849137
Alignment:
Q  325 ccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgag 378  Q
    ||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||    
T  50849084 ccgaaccttacatatattatgcattgtcattaccaactgagttaagctcacgag 50849137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 10480760 - 10480708
Alignment:
Q  329 accttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    ||||||||||||||||| |||||| ||| ||| ||| ||||||||||||||||    
T  10480760 accttacatatattatgcattgtccttaccatctgagttaagctcacgaggac 10480708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 45418054 - 45418094
Alignment:
Q  305 tggtgtccggagatcgaatcccgaaccttacatatattatg 345  Q
    |||||||||||| |||||||| ||||||| |||||||||||    
T  45418054 tggtgtccggagttcgaatcctgaaccttgcatatattatg 45418094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 23118040 - 23118115
Alignment:
Q  303 ggtggtgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgag 378  Q
    |||||||||| ||| ||||| ||| |||||||||||||||||| |||||| ||||||  ||| |||||||||||||    
T  23118040 ggtggtgtccagagttcgaaccccaaaccttacatatattatgcattgtccttatcaactgagttaagctcacgag 23118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 8882409 - 8882466
Alignment:
Q  324 cccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    |||| ||||||||||||||||| | |||||||||||  ||| ||||||||||| ||||    
T  8882409 cccggaccttacatatattatgcactgtcattatcaactgagttaagctcacggggac 8882466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 7216850 - 7216798
Alignment:
Q  329 accttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    ||||||||||||||||  || ||| |||||| |||| ||||||||||||||||    
T  7216850 accttacatatattattcatcgtccttatcaaatgagttaagctcacgaggac 7216798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 18981193 - 18981249
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctca 374  Q
    ||||| |||||||||||||||||||||| |||||  ||| ||| ||| |||||||||    
T  18981193 tcgaaccccgaaccttacatatattatgcattgttcttaccatttgagttaagctca 18981249  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Original strand, 35682696 - 35682759
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    ||||| |||||||||||||||||||||||||||||  || ||  |||  |||||||||||||||    
T  35682696 tcgaaacccgaaccttacatatattatggattgtccgtaccaactgagctaagctcacgaggac 35682759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 18422459 - 18422517
Alignment:
Q  320 gaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgag 378  Q
    |||||||||||||||||||||||||| |||||   |||||  ||||||||||| |||||    
T  18422459 gaatcccgaaccttacatatattatgcattgtttctatcaactgaattaagcttacgag 18422517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 44975250 - 44975202
Alignment:
Q  303 ggtggtgtccggagatcgaatcccgaaccttacatatattatggattgt 351  Q
    ||||||||||||   |||||||||||||||| ||||||||||| |||||    
T  44975250 ggtggtgtccgggtttcgaatcccgaaccttgcatatattatgcattgt 44975202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 7371539 - 7371610
Alignment:
Q  305 tggtgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacg 376  Q
    |||||||||| | ||||| |||| ||||| ||||||||||| |||||| ||||||  ||| |||||||||||    
T  7371539 tggtgtccggggttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 39842026 - 39842084
Alignment:
Q  328 aaccttacatatattatggattgtcattatcatatgaattaagctcacgaggacagaga 386  Q
    |||||||||||||||||| |||||| ||||||  ||| ||||| ||||||||| |||||    
T  39842026 aaccttacatatattatgcattgtccttatcaactgagttaagatcacgaggatagaga 39842084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 42756110 - 42756151
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatca 359  Q
    |||||||||||||||| ||||||||||| |||||| ||||||    
T  42756110 tcgaatcccgaaccttgcatatattatgcattgtccttatca 42756151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 36071215 - 36071167
Alignment:
Q  304 gtggtgtccggagatcgaatcccgaaccttacatatattatggattgtc 352  Q
    |||||| |||| | ||||| |||||||||||||||||||||| ||||||    
T  36071215 gtggtgcccggcgttcgaaccccgaaccttacatatattatgcattgtc 36071167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 45029609 - 45029665
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctca 374  Q
    ||||| ||| |||||||||||||||||| |||||| ||| || |||| |||||||||    
T  45029609 tcgaaccccaaaccttacatatattatgcattgtccttaccaaatgagttaagctca 45029665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 54677296 - 54677248
Alignment:
Q  304 gtggtgtccggagatcgaatcccgaaccttacatatattatggattgtc 352  Q
    |||||| |||||| | ||||| |||||||||||||||||||| ||||||    
T  54677296 gtggtggccggagtttgaatctcgaaccttacatatattatgcattgtc 54677248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 47440813 - 47440766
Alignment:
Q  312 cggagatcgaatcccgaaccttacatatattatggattgtcattatca 359  Q
    ||||| |||||||||||||||||||||||||||  |||||| ||||||    
T  47440813 cggagttcgaatcccgaaccttacatatattatatattgtccttatca 47440766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 47039484 - 47039426
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacg 376  Q
    ||||| ||||||| || ||||||||||| |||||| ||||||| ||| |||||||||||    
T  47039484 tcgaaccccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacg 47039426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 17507703 - 17507744
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatca 359  Q
    |||||||||||||||| ||||||||||| ||||||| |||||    
T  17507703 tcgaatcccgaaccttgcatatattatgcattgtcaatatca 17507744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 26973411 - 26973354
Alignment:
Q  325 ccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    ||||||||||||||||||||| |||||| ||| ||  | ||||||| |||||||||||    
T  26973411 ccgaaccttacatatattatgcattgtccttaccaatttaattaagttcacgaggaca 26973354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 28130949 - 28131001
Alignment:
Q  329 accttacatatattatggattgtcattatcatatgaattaagctcacgaggac 381  Q
    ||||| ||||||||||| |||||| ||| ||| |||| |||||||||||||||    
T  28130949 accttgcatatattatgcattgtccttaccatttgaactaagctcacgaggac 28131001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 53633621 - 53633685
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    ||||| |||| ||||||||||||||||| ||| || ||| ||  ||| |||||||||||||||||    
T  53633621 tcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgaggaca 53633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 7388045 - 7388107
Alignment:
Q  320 gaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    |||||||||||||||||||||||||| ||||||   | ||  ||| |||||||||||||||||    
T  7388045 gaatcccgaaccttacatatattatgcattgtcccaaccaactgagttaagctcacgaggaca 7388107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 36755069 - 36755008
Alignment:
Q  320 gaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |||||||||||||||||    
T  36755069 gaatcccgaaccttacatatattatgcattgtc-ctaccaactgagttaagctcacgaggaca 36755008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 36760866 - 36760805
Alignment:
Q  320 gaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |||||||||||||||||    
T  36760866 gaatcccgaaccttacatatattatgcattgtc-ctaccaactgagttaagctcacgaggaca 36760805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 8879751 - 8879811
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgag 378  Q
    |||||||||||||||| ||||||||||| ||||||  || ||  ||| |||||||||||||    
T  8879751 tcgaatcccgaaccttgcatatattatgcattgtctataccaactgagttaagctcacgag 8879811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 34000313 - 34000261
Alignment:
Q  324 cccgaaccttacatatattatggattgtcattatcatatgaattaagctcacg 376  Q
    |||||||||||||||||||||| ||| || ||||||  ||| |||||||||||    
T  34000313 cccgaaccttacatatattatgcattatccttatcaactgagttaagctcacg 34000261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 29431530 - 29431460
Alignment:
Q  304 gtggtgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctca 374  Q
    ||||||||||| ||||||| | |  |||||||||| |||||| |||||| |||||| ||||| ||||||||    
T  29431530 gtggtgtccggggatcgaacctcagaccttacatacattatgcattgtccttatcaaatgaactaagctca 29431460  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 31140816 - 31140881
Alignment:
Q  318 tcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggacag 383  Q
    |||||||| ||||||| ||||||||||  ||| || ||||||  ||| ||||||||||||||||||    
T  31140816 tcgaatcctgaaccttgcatatattatacattatctttatcagctgagttaagctcacgaggacag 31140881  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 6470626 - 6470678
Alignment:
Q  324 cccgaaccttacatatattatggattgtcattatcatatgaattaagctcacg 376  Q
    |||||| ||||||||||||||| |||||| ||||||  ||| |||||||||||    
T  6470626 cccgaaacttacatatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 9973288 - 9973240
Alignment:
Q  305 tggtgtccggagatcgaatcccgaaccttacatatattatggattgtca 353  Q
    ||||| |||||| ||||| ||| |||||||||||||||||| |||||||    
T  9973288 tggtggccggagttcgaaccccaaaccttacatatattatgcattgtca 9973240  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 28592677 - 28592757
Alignment:
Q  304 gtggtgtccggagatcgaatcccgaaccttacatatattatggattgtcattatcatatgaattaagctcacgaggacaga 384  Q
    ||||||||||  | ||||| |||  ||||||||||||||||| |||||| ||  ||  |||| ||||||||||||||||||    
T  28592677 gtggtgtccgaggttcgaaccccagaccttacatatattatgcattgtctttgccaattgaactaagctcacgaggacaga 28592757  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 4238822 - 4238782
Alignment:
Q  312 cggagatcgaatcccgaaccttacatatattatggattgtc 352  Q
    ||||| ||||| |||||||||||||||||||||| ||||||    
T  4238822 cggagttcgaaccccgaaccttacatatattatgcattgtc 4238782  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 5676784 - 5676732
Alignment:
Q  330 ccttacatatattatggattgtcattatcatatgaattaagctcacgaggaca 382  Q
    |||| ||||||||||| |||||||||| ||  ||| |||||||||||||||||    
T  5676784 ccttgcatatattatgcattgtcattaccaactgagttaagctcacgaggaca 5676732  T

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