View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11895_low_7 (Length: 572)
Name: NF11895_low_7
Description: NF11895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11895_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 44501222 - 44500664
Alignment:
| Q |
1 |
attccgcctagcatattttcatctcagactttgacatattttaagcttggtatttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44501222 |
attccgcctagcatattttcatctcagactttgacatattttaagcttggtatttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaatt |
44501123 |
T |
|
| Q |
101 |
ttcctgcattaaccaatttgcaactatggcattttgcattttctgccgaggataatgaccatgccgagccattttcaacctttaacagattgaatagttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44501122 |
ttcctgcattaaccaatttgcaactatggcattttgcattttctgctgaggataatgaccgtgccgagccattttcaacctttaacagattgaatagttt |
44501023 |
T |
|
| Q |
201 |
ggtccttcacgattgtaccgtggagggtgcacaaactctctccatatcaaatgaaacacttgtcaatttaaacattgataaaaacatatacaacctttac |
300 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
44501022 |
ggtccttcacgattgtaccgtgaagggtgcacaaactctctccatatcaaatgaaacacttgtcaatttaaccatggataaaaacatatacaacctttac |
44500923 |
T |
|
| Q |
301 |
aacattgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtag |
400 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44500922 |
aacattgatctaagtactccaagtctttgtaagtttgtttttactggtagtcattatcagaatctttctggaagcaatgcttcttctcttaaacatgtag |
44500823 |
T |
|
| Q |
401 |
atatttatgcacatgtagttccatttagcgaagactctccttattttctattcagctggatactagagcttgctaacataaaatcattgatggtctctac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
44500822 |
atatttatgcacatgtagttccatttagcgaagactctccttattttc-attcagctggctactagagcttgctaacataaaatcattgacggtctctac |
44500724 |
T |
|
| Q |
501 |
aactactcttcaggtactttaacttggcatgtttcacgctatttttaactttctttttga |
560 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44500723 |
aactactcttcaggtactttaacttggcatgtttcacgctatttttaactttctttttga |
44500664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 411
Target Start/End: Complemental strand, 45910579 - 45910473
Alignment:
| Q |
305 |
ttgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtagatat |
404 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||| | || | || || ||||||||| |||| || ||||| ||||||||||||||||||||| || |
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| T |
45910579 |
ttgatctatgtactccaagtctttgtacgtttgttttttccggtactccttttcagaaactctctgcaaacaatgtttcttctcttaaacatgtagagat |
45910480 |
T |
|
| Q |
405 |
ttatgca |
411 |
Q |
| |
|
| ||||| |
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|
| T |
45910479 |
tcatgca |
45910473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 20977891 - 20977941
Alignment:
| Q |
151 |
gataatgaccatgccgagccattttcaacctttaacagattgaatagtttg |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
20977891 |
gataatgaccatgccgagccattttctgcctttaacaggttgaatagtttg |
20977941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 525
Target Start/End: Complemental strand, 20981096 - 20981016
Alignment:
| Q |
445 |
tttctattcagctggatactagagcttgctaacataaaatcattgatggtctctacaactactcttcaggtactttaactt |
525 |
Q |
| |
|
||||||| ||||||| | |||||| ||||| | ||||||||||||| ||| || ||||| |||||||||||||||||||| |
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|
| T |
20981096 |
tttctatacagctggctcctagagtttgctgatataaaatcattgacagtcactgcaactgctcttcaggtactttaactt |
20981016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 20994388 - 20994274
Alignment:
| Q |
297 |
ttacaacattgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacat |
396 |
Q |
| |
|
|||||| ||||| ||| || ||||||||||||||| |||| ||||| ||| | || |||||||| | | ||| |||||| |||||||||||||||| |
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|
| T |
20994388 |
ttacaagattgagctatgtactccaagtctttgtacgtttacttttaatggtattccttatcagagaatcattgggagcaatatttcttctcttaaacat |
20994289 |
T |
|
| Q |
397 |
gtagatatttatgca |
411 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
20994288 |
gtagatattcatgca |
20994274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 20978194 - 20978270
Alignment:
| Q |
445 |
tttctattcagctggatactagagcttgctaacataaaatcattgatggtctctacaactactcttcaggtacttta |
521 |
Q |
| |
|
|||||||| |||||| | ||||| ||||| | ||||||||||||| ||| || |||||||||||||||||||||| |
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|
| T |
20978194 |
tttctattaagctggctcatagagtttgctgatataaaatcattgaccgtcactgcaactactcttcaggtacttta |
20978270 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 411
Target Start/End: Complemental strand, 2995894 - 2995864
Alignment:
| Q |
381 |
ttcttctcttaaacatgtagatatttatgca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
2995894 |
ttcttctcttaaacatgtagatatttatgca |
2995864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 45881520 - 45881480
Alignment:
| Q |
167 |
agccattttcaacctttaacagattgaatagtttggtcctt |
207 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||| |
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|
| T |
45881520 |
agccattttcaaccttgaaccggttgaatagtttggtcctt |
45881480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 3978715 - 3978822
Alignment:
| Q |
304 |
attgatctaagttctccaagtctttgtaagtttgtttttactggcagtcattatcagaaactttctggaagcaatgcttcttctcttaaacatgtagata |
403 |
Q |
| |
|
|||||| || || ||||||||||||| |||||||||||||| || | || ||||| || || ||||| |||| | ||||||||||||||||||||||| |
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|
| T |
3978715 |
attgatttatgtactccaagtctttggaagtttgtttttaccggtactccttatctgagtctatctgggagcagtatttcttctcttaaacatgtagata |
3978814 |
T |
|
| Q |
404 |
tttatgca |
411 |
Q |
| |
|
|| ||||| |
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|
| T |
3978815 |
ttgatgca |
3978822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 555
Target Start/End: Original strand, 3978856 - 3978967
Alignment:
| Q |
445 |
tttctattcagctggatactagagcttgctaacataaaatcattgatggtctctacaactactcttcaggtactttaacttggcatg-tttcacgctatt |
543 |
Q |
| |
|
|||||||| |||||| | ||| | ||||||| ||||||||||||| ||| || |||||||||||||||||| ||| ||||||||| ||| | |||||| |
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|
| T |
3978856 |
tttctattaagctggctggtagtgtttgctaatataaaatcattgacagtcactgcaactactcttcaggtaccttaccttggcatgttttgaagctatt |
3978955 |
T |
|
| Q |
544 |
tttaactttctt |
555 |
Q |
| |
|
||| |||||||| |
|
|
| T |
3978956 |
ttttactttctt |
3978967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 201
Target Start/End: Original strand, 3978480 - 3978612
Alignment:
| Q |
69 |
tcatgaaacaatgtttccgaaatctctcaattttcctgcattaaccaatttgcaactatggcattttgcattttctgccgaggataatgaccatgccgag |
168 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| || || ||||| || |||||| || || |||||| |||| || || |||||||| ||||||| |
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|
| T |
3978480 |
tcatgaaacaccgtttccaaaatctctcaatttgccggctttaacgaacttgcaattaggggattttgtatttgatgttgacgataatgattgtgccgag |
3978579 |
T |
|
| Q |
169 |
ccattttcaacctttaacagattgaatagtttg |
201 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| |
|
|
| T |
3978580 |
ccattttcgatttttaacaggttgaatagtttg |
3978612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 36590710 - 36590648
Alignment:
| Q |
464 |
tagagcttgctaacataaaatcattgatggtctctacaactactcttcaggtactttaacttg |
526 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||||| | | |||||||||||||| |||||||| |
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|
| T |
36590710 |
tagaacttgctaatatcaaatcattgacggtctctgcgagtactcttcaggtaccttaacttg |
36590648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 516
Target Start/End: Complemental strand, 36636227 - 36636190
Alignment:
| Q |
479 |
taaaatcattgatggtctctacaactactcttcaggta |
516 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
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|
| T |
36636227 |
taaaatcattgatggtctcttcaactactcttcgggta |
36636190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 520
Target Start/End: Complemental strand, 33839610 - 33839536
Alignment:
| Q |
446 |
ttctattcagctggatactagagcttgctaacataaaatcattgatggtctctacaactactcttcaggtacttt |
520 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||| ||||||| | |||||| ||| ||||||||||||||||| |
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|
| T |
33839610 |
ttctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtacttt |
33839536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 7976135 - 7976052
Alignment:
| Q |
465 |
agagcttgctaacataaaatcattgatggtctctacaactactcttcaggtac-tttaacttggcatgtttcacgctattttta |
547 |
Q |
| |
|
||||||| || | ||||||||||||| |||| || |||||||||||||||||| |||||||| ||||||| | |||||||||| |
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|
| T |
7976135 |
agagcttcctgatataaaatcattgacggtcacttcaactactcttcaggtacttttaacttaccatgttttaggctattttta |
7976052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 7895468 - 7895513
Alignment:
| Q |
162 |
tgccgagccattttcaacctttaacagattgaatagtttggtcctt |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
7895468 |
tgccgagccattttcaacttttaacaagttgaatagtttgctcctt |
7895513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 7895311 - 7895403
Alignment:
| Q |
10 |
agcatattttcatctcagactttgacatattttaagcttggta-tttactctggtgtaggtcatgaaacaatgtttccgaaatctctcaattt |
101 |
Q |
| |
|
||||| ||||||| |||| |||| ||| || |||||||| ||| ||||| || || ||||||||||||| ||||||| |||||| ||||||| |
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|
| T |
7895311 |
agcatgttttcatgtcagtctttaacacatcttaagctttgtactttaccctaatggaggtcatgaaacactgtttccaaaatctttcaattt |
7895403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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