View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11896_high_12 (Length: 329)

Name: NF11896_high_12
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11896_high_12
NF11896_high_12
[»] chr3 (2 HSPs)
chr3 (9-284)||(20884186-20884461)
chr3 (111-176)||(36163445-36163510)
[»] chr6 (3 HSPs)
chr6 (111-176)||(18191808-18191873)
chr6 (111-176)||(21396356-21396421)
chr6 (111-226)||(31855713-31855831)
[»] chr4 (2 HSPs)
chr4 (109-229)||(53226740-53226863)
chr4 (133-177)||(52189270-52189314)
[»] chr2 (2 HSPs)
chr2 (114-283)||(4753593-4753769)
chr2 (140-179)||(36669086-36669125)
[»] chr8 (1 HSPs)
chr8 (111-178)||(32565566-32565633)
[»] chr7 (1 HSPs)
chr7 (183-229)||(28643171-28643217)
[»] chr1 (2 HSPs)
chr1 (140-214)||(26529599-26529676)
chr1 (147-214)||(36574060-36574130)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 20884186 - 20884461
Alignment:
Q  9 aatgatatattttttaagtggtagatgaagtggtaaacattgagtagacagctgtttaggtcattgaaaatgtcactcgttattagaatgatccctaatt 108  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||| |||||||||||||||  | |||||||||||||||||||||    
T  20884186 aatgatatattttttaagtggtaggtgaagtggtaaatattgagtaaaccgctgtttagatcattgaaaatgtcatccattattagaatgatccctaatt 20884285  T
Q  109 agtttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttgataccggtgttgatttgtctattacacttgcc 208  Q
    | |||||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20884286 aatttaatgaatcaaaaactcctccaatacatgttctcttagtcaaatgcatccaaaacgttaacttgataacggtgttgatttgtctattacacttgcc 20884385  T
Q  209 acttcaagtgcattgttggccatgtttgaagggatttaattgcatacgataataaacattgcaatggtaatttgta 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20884386 acttcaagtgcattgttggccatgttggaagggatttaattgcataggataataaacattgcaatggtaatttgta 20884461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 36163445 - 36163510
Alignment:
Q  111 tttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttg 176  Q
    |||||||||||||||| ||  |||||| | ||| | |||||||||| |||||||||||||||||||    
T  36163445 tttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttg 36163510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 18191808 - 18191873
Alignment:
Q  111 tttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttg 176  Q
    |||||||||||||||| ||  |||||| ||||| | |||||||||| |||||||||||||||||||    
T  18191808 tttaatgaatcaaaaactcccccaatgtatgttatgttagtcaaatgcatccaaaacgttaacttg 18191873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 21396356 - 21396421
Alignment:
Q  111 tttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttg 176  Q
    |||||||||| ||||| || ||||||| ||||||| |||||||||| ||||||||||| |||||||    
T  21396356 tttaatgaataaaaaactcctccaatgtatgttcttttagtcaaatacatccaaaacgctaacttg 21396421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 31855713 - 31855831
Alignment:
Q  111 tttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttgat---accggtgttgatttgtctattacacttgc 207  Q
    |||||||||||||||| ||  | |||| ||||| | ||||||||||  ||||||||| |||| ||| |   | ||||| |||| ||||||||||||||||    
T  31855713 tttaatgaatcaaaaactcccctaatgtatgttatgttagtcaaatgtatccaaaacattaatttggtgttaacggtgctgatgtgtctattacacttgc 31855812  T
Q  208 cacttcaagtgcattgttg 226  Q
    ||||||||  |||||||||    
T  31855813 cacttcaaccgcattgttg 31855831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 53226740 - 53226863
Alignment:
Q  109 agtttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaactt---gataccggtgttgatttgtctattacactt 205  Q
    |||||||||||||||||| || ||||||| |||||||  ||||||||| ||||  ||||||||||||   | || | ||| ||| |||||| ||||||||    
T  53226740 agtttaatgaatcaaaaactcctccaatgtatgttctaatagtcaaatgcatctgaaacgttaacttagtgttaacagtgctgacttgtctgttacactt 53226839  T
Q  206 gccacttcaagtgcattgttggcc 229  Q
    ||||||| |  ||||| |||||||    
T  53226840 gccactttagctgcatcgttggcc 53226863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 52189270 - 52189314
Alignment:
Q  133 caatgcatgttctcttagtcaaattcatccaaaacgttaacttga 177  Q
    ||||| ||||||  |||||||||| ||||||||||||||||||||    
T  52189270 caatgtatgttccgttagtcaaatgcatccaaaacgttaacttga 52189314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 283
Target Start/End: Original strand, 4753593 - 4753769
Alignment:
Q  114 aatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaact---tgataccggtgttgatttgtctattacacttgccac 210  Q
    ||||||||||||| ||   ||||| ||||| | |||||||||| |||||||||||||||||   || || ||| | |||| ||||||||| || || ||     
T  4753593 aatgaatcaaaaactccctcaatgtatgttttgttagtcaaatgcatccaaaacgttaacttggtgttaacggcgctgatgtgtctattaaacatgtcat 4753692  T
Q  211 ttcaagtgcattgttgg----ccatgtttgaagggatttaattgcatacgataataaacattgcaatggtaatttgt 283  Q
    ||||  | |||||||||    ||||| | | ||||| ||||||||||| ||||| ||||||||||||||| ||||||    
T  4753693 ttcacctccattgttggccttccatgctggcagggacttaattgcatatgataacaaacattgcaatggtcatttgt 4753769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 36669125 - 36669086
Alignment:
Q  140 tgttctcttagtcaaattcatccaaaacgttaacttgata 179  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  36669125 tgttctgttagtcaaatgcatccaaaacgttaacttgata 36669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 32565633 - 32565566
Alignment:
Q  111 tttaatgaatcaaaaattcttccaatgcatgttctcttagtcaaattcatccaaaacgttaacttgat 178  Q
    |||||||||||||||| ||  |||||| | ||| | |||||||||| |||||||||||||||||||||    
T  32565633 tttaatgaatcaaaaactcccccaatgtacgttatgttagtcaaatgcatccaaaacgttaacttgat 32565566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 28643171 - 28643217
Alignment:
Q  183 gtgttgatttgtctattacacttgccacttcaagtgcattgttggcc 229  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||    
T  28643171 gtgttgatttgtctgttacacttgccactccaactgcattgttggcc 28643217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 26529599 - 26529676
Alignment:
Q  140 tgttctcttagtcaaattcatccaaaacgttaacttga---taccggtgttgatttgtctattacacttgccacttca 214  Q
    |||||| |||||||||| ||||||||||||||||||||   || ||||| |||||||||  |||||| | ||||||||    
T  26529599 tgttctgttagtcaaatgcatccaaaacgttaacttgatgttaacggtgctgatttgtccgttacacataccacttca 26529676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 36574060 - 36574130
Alignment:
Q  147 ttagtcaaattcatccaaaacgttaacttga---taccggtgttgatttgtctattacacttgccacttca 214  Q
    |||||||||| ||||||||||||||||||||   || ||||| |||| ||||  |||||| ||||||||||    
T  36574060 ttagtcaaatgcatccaaaacgttaacttgatgctaacggtgctgatgtgtccgttacacatgccacttca 36574130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University