View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11896_high_15 (Length: 297)

Name: NF11896_high_15
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11896_high_15
NF11896_high_15
[»] chr1 (10 HSPs)
chr1 (19-291)||(2020841-2021115)
chr1 (87-291)||(2007774-2007978)
chr1 (155-269)||(3363965-3364079)
chr1 (134-291)||(3217185-3217342)
chr1 (228-291)||(3380264-3380327)
chr1 (186-291)||(3366390-3366495)
chr1 (225-275)||(2947232-2947282)
chr1 (225-275)||(3353406-3353456)
chr1 (245-281)||(1794138-1794174)
chr1 (32-93)||(2007658-2007720)
[»] chr2 (3 HSPs)
chr2 (155-290)||(20924478-20924613)
chr2 (149-291)||(20936082-20936224)
chr2 (149-291)||(20954323-20954465)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 2020841 - 2021115
Alignment:
Q  19 attggattagagtcctata--aatcagactcatgtatcttcctattcatgttgtatcgatcaatacaatatgatttatggatttggcacaatttcatgta 116  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2020841 attgcattagagtcctatataaatcagactcatgtatcttcctattcatgttgtatcaatcaatacaatatgatttatggatttggcacaatttcatgta 2020940  T
Q  117 ggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtg 216  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2020941 ggcagcacaggaggagaatacggtcgttttagcacctgcctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtgacatgtg 2021040  T
Q  217 ttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 291  Q
    |  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2021041 tgtattgaaggcatctctggtatgaaagctgaattagattttttgagatttctacttctctattcgcctatgcta 2021115  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 291
Target Start/End: Original strand, 2007774 - 2007978
Alignment:
Q  87 tgatttatggatttggcacaatttcatgtaggcagtacaggaggagaatactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggag 186  Q
    |||||||| ||||||  |||||| ||||||||||  ||| ||| |||| ||| ||||||||||||| |||| |||||| |||||| || ||||| |||||    
T  2007774 tgatttatagatttgtaacaattgcatgtaggcaaaacatgagaagaaaactatcgttttagcacccgccttcttttgctgggaagatatctttctggag 2007873  T
Q  187 ccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgccta 286  Q
    |||||||| | || || ||||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||     
T  2007874 ccatccatgctcacccgagtgcgacatgtagggattgaaggcatctctggcatcaaatctgaattagattttatgagatttctacttctccattcgcctg 2007973  T
Q  287 tgcta 291  Q
    |||||    
T  2007974 tgcta 2007978  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 3363965 - 3364079
Alignment:
Q  155 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 254  Q
    |||||| ||||||||||||| | |||| ||||||| | || |||||  ||||||||||||||  |||  | |||||||||||  | ||| ||||||||||    
T  3363965 cctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattaga 3364064  T
Q  255 ttttatgagatttct 269  Q
    |||||| ||||||||    
T  3364065 ttttatcagatttct 3364079  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 3217342 - 3217185
Alignment:
Q  134 atactgtcgttttagcacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctc 233  Q
    |||||| | ||||| |||| ||||||| ||||||| || ||||||||||||||||| || | ||| ||| |||||| ||||||   ||  |||| |||||    
T  3217342 atactgaccttttaacacccgcctcctattgttggaaagatgtctttttggagccacccgtgcccctccgagtgcgccatgtgagcataaaaggaatctc 3217243  T
Q  234 tggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 291  Q
    ||  |  | | |||||||||||||||| |||||||||||| | ||||| || ||||||    
T  3217242 tgacaatacatctgaattagattttatcagatttctacttatgtattctcccatgcta 3217185  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 3380264 - 3380327
Alignment:
Q  228 catctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcctatgcta 291  Q
    |||||||||||| ||| | ||||||||||||||  | ||||||||||||||||| |||||||||    
T  3380264 catctctggtatcaaatcggaattagattttattcggtttctacttctctattctcctatgcta 3380327  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 3366390 - 3366495
Alignment:
Q  186 gccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattagattttatgagatttctacttctctattcgcct 285  Q
    |||| |||| ||||| | |||||||||||||   || || |||||||||||||| ||| | ||| ||||||||||  | |||||||||| |||||| |||    
T  3366390 gccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagattttattcggtttctacttcgctattctcct 3366489  T
Q  286 atgcta 291  Q
    ||||||    
T  3366490 atgcta 3366495  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 2947282 - 2947232
Alignment:
Q  225 aggcatctctggtatgaaagctgaattagattttatgagatttctacttct 275  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  2947282 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttct 2947232  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 3353406 - 3353456
Alignment:
Q  225 aggcatctctggtatgaaagctgaattagattttatgagatttctacttct 275  Q
    |||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  3353406 aggcatttctggtatcaaatctgaattagattttatcagatttcttcttct 3353456  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 1794138 - 1794174
Alignment:
Q  245 ctgaattagattttatgagatttctacttctctattc 281  Q
    |||||||||||||||| |||||||||||||| |||||    
T  1794138 ctgaattagattttatcagatttctacttctatattc 1794174  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 2007658 - 2007720
Alignment:
Q  32 cctataaatcaga--ctcatgtatcttcctattcatgttgtatcgatcaatacaatatgattta 93  Q
    |||||||||||||  ||||||||||||| | ||||| || |||| |||||||||||||||||||    
T  2007658 cctataaatcagagactcatgtatcttctttttcatctt-tatcaatcaatacaatatgattta 2007720  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 290
Target Start/End: Original strand, 20924478 - 20924613
Alignment:
Q  155 cctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctgaattaga 254  Q
    |||||| |||||||||| || |||||| |||||||   || | | || || ||| |||||||  |||  ||| |||||||||||  ||| ||||||||||    
T  20924478 cctcctattgttgggaagatatcttttcggagccagatatgctcctcaaattgcaacatgtggagatacaagacatctctggtaccaaatctgaattaga 20924577  T
Q  255 ttttatgagatttctacttctctattcgcctatgct 290  Q
    |||||| |||||||||||||||||||| ||| ||||    
T  20924578 ttttatcagatttctacttctctattcacctgtgct 20924613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 20936082 - 20936224
Alignment:
Q  149 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 248  Q
    |||||||  ||| ||||||||||||  |||||| || |||| |||| ||||| | |||||||||||||  ||| || ||||||| |||||  |||   ||    
T  20936082 cacctgctgcctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattgga 20936181  T
Q  249 attagattttatgagatttctacttctctattcgcctatgcta 291  Q
    |||||||||||| | |||||||||||| ||||| ||| |||||    
T  20936182 attagattttatcaaatttctacttctatattctcctgtgcta 20936224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 20954323 - 20954465
Alignment:
Q  149 cacctgcctccttttgttgggaaaatgtctttttggagccatccatacccatccaagtgcgacatgtgttgattgaaggcatctctggtatgaaagctga 248  Q
    |||||||| ||| |||||||||| || | |||| ||  ||| |||| ||||| |||||||||||||||  |||||| ||||||| |||||  ||    ||    
T  20954323 cacctgccgcctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttgga 20954422  T
Q  249 attagattttatgagatttctacttctctattcgcctatgcta 291  Q
    |||||||||||| | |||||||||||| ||||| || ||||||    
T  20954423 attagattttatcaaatttctacttctatattctcccatgcta 20954465  T

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