View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_high_17 (Length: 276)
Name: NF11896_high_17
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 10759871 - 10759669
Alignment:
| Q |
1 |
catgcatatcaactcacttaaatatgtaaataaaa-tctaaatacgcattttggtaattggtatatattaatctaaatatatatgtgcaatgtataactt |
99 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
10759871 |
catgcatatcaactcacttaaatatgtaaataaaaatctaaatacgcattttggtaatc--tatatat--------atatatatgcgcaatgtataactt |
10759782 |
T |
|
| Q |
100 |
ttcgtaaatgatatcaagtgaaaataatagtctttggatttaaaatcgggggtcaagattagaaggctcattatctctactgtatatgggtttttcaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10759781 |
ttcgtaaatgatatcaagtgaaaataatagtctttggatttaaaatcgggggtcaagattagaaggctcattatctctactgtatatgggtttttcaaat |
10759682 |
T |
|
| Q |
200 |
tctagaatttttg |
212 |
Q |
| |
|
|| | |||||||| |
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| T |
10759681 |
tccaaaatttttg |
10759669 |
T |
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