View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11896_high_19 (Length: 274)
Name: NF11896_high_19
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_19 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 42452817 - 42453064
Alignment:
| Q |
15 |
atgaatgcaatcaaaatcatgaagacaaaacttgtactgtggcttaagaatctaattaaaataaacttaaattcaacgaagtcgtctccatattaaaagc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
42452817 |
atgaatgcaatcaaaatcatgaagacaaaacttgtactgtggtttaagaatctaattaaaa------------ctacgaagtcgtgtccatattaaaagc |
42452904 |
T |
|
| Q |
115 |
cacaactttctttaatttacctcttgcataaacttttcatttcctacttatagatatattatgtaaaagaaactaacgttaagtgaagtctctttgacca |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
42452905 |
cacaactttctttaatttacctcttccataaactttttatttcttacttatagatatattatgtgaaagaaactaacattaagtgaagtctctttgacca |
42453004 |
T |
|
| Q |
215 |
acaaaaaactttaaaagttcaatcaaatcttttttagaggttttattcctttaaatcatc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453005 |
acaaaaaactttaaaagttcaatcaaatcttttttagaggttttattcctttaaatcatc |
42453064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 24117110 - 24116858
Alignment:
| Q |
23 |
aatcaaaatcatgaagacaaaacttgtactgtggcttaagaatctaattaaaataaacttaaattcaacgaagtcgtctccatattaaaagccacaactt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || || | ||| ||| |||||||||||||||||||| |
|
|
| T |
24117110 |
aatcaaaatcatgaagacaaaacttgtattgtggtttaagaatctaattaaaataaacttaaactctacaatgtcatcttcatattaaaagccacaactt |
24117011 |
T |
|
| Q |
123 |
tctttaatttacctcttgcataaacttttcatttcctacttatagatatattatgtaaaagaaactaacgttaagtgaagtctctttgaccaacaaaaaa |
222 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24117010 |
tctttaatttacctattgcataaactttttatttcctacttatagatatattatgtgaaagaaactaacattaagtgaagtctctttgaccaacaaaaaa |
24116911 |
T |
|
| Q |
223 |
ctttaaaagttcaatcaaatcttttttagagg-ttttattcctttaaatcatc |
274 |
Q |
| |
|
|||| || || | |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24116910 |
atttagaatttaagtcaaatcttttttagaggtttttattcctttaaatcatc |
24116858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University