View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11896_high_2 (Length: 585)
Name: NF11896_high_2
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 6060449 - 6059886
Alignment:
| Q |
1 |
aaggagggcatcatcaagtttttgttagatgataacagtgatgatggtgaagaagtgattgtgatacctattgtgggaatgggaggggtaggaaaaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060449 |
aaggagggcatcatcaagtttttgttagatgataacagtgataatggtgaagaagtgattgtgatacctattgtgggaatgggaggggtaggaaaaacta |
6060350 |
T |
|
| Q |
101 |
ctttagctcagttggtgtacaatgacgagtatttgaagcatgtatttgattttaaagcttgggtttgtgtttctgaagagtttgacattttgagggttac |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060349 |
ctttagctcagttggtgtacaatgatgagtatttgaagcatgtatttgattttaaagcttgggtttgtgtttctgaagagtttgacattttgagggttac |
6060250 |
T |
|
| Q |
201 |
aaagattataacacaagcaattacaagaagaacttgtgaaatgaatgatctaaatttacttcaacttgatttgcaagatatgttgaaagaaaagaaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060249 |
aaagattataacacaagcaattacaagaagaacttgtgaaatgaatgatctaaatttacttcaacttgatttgcaagatatgttgaaagaaaagaaattc |
6060150 |
T |
|
| Q |
301 |
tttgttgttttggatgatgtttggattgaggattatgtcaattgggatcgtcttataaaaccttttcaacgtgggattaagggaagtaaaattcttataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060149 |
tttgttgttttggatgatgtttggattgaggattatgtcaattgggatcttcttataaaaccttttcaacgtgggattaagggaagtaaaattcttataa |
6060050 |
T |
|
| Q |
401 |
caactcgcagtgaaaaggttgcctctgtagtccaaacggttcaaacttataggctgaatcagttgtcgaatgaagattgttggttagtgtttgcaaacca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6060049 |
caactcgcagtgaaaaggttgcctctgtagtccaaacggttcaaacttataggctaaatcagttgtcgaatgaagattgttggttagtgtttgcaaacca |
6059950 |
T |
|
| Q |
501 |
tgcatgttttaccccgggatctggtaggaatgctacagatctagaaaaaattggccgagagatt |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6059949 |
tgcatgttttaccccgggatctggtaggaatgctacagatctagaaaaaattggccgagagatt |
6059886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 404
Target Start/End: Complemental strand, 34802803 - 34802690
Alignment:
| Q |
291 |
aaagaaattctttgttgttttggatgatgtttggattgaggattatgtcaattgggatcgtcttataaaaccttttcaacgtgggattaagggaagtaaa |
390 |
Q |
| |
|
|||||| ||||| |||| ||||||||||| |||| ||||||||||| || |||| || |||||||| ||||||||| | || | ||| ||||||||| |
|
|
| T |
34802803 |
aaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataaggccttttcaatgcggaactaaaggaagtaaa |
34802704 |
T |
|
| Q |
391 |
attcttataacaac |
404 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
34802703 |
attcttgtaacaac |
34802690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 4246819 - 4246855
Alignment:
| Q |
470 |
atgaagattgttggttagtgtttgcaaaccatgcatg |
506 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4246819 |
atgaagattgttggtcagtgtttgcaatccatgcatg |
4246855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 4253938 - 4253974
Alignment:
| Q |
470 |
atgaagattgttggttagtgtttgcaaaccatgcatg |
506 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4253938 |
atgaagattgttggtcggtgtttgcaaaccatgcatg |
4253974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University