View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_high_20 (Length: 265)
Name: NF11896_high_20
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_20 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 31045093 - 31045357
Alignment:
| Q |
1 |
gacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctcctaaagcctcaccaaacgaagcttgcggcagataacaag |
100 |
Q |
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| T |
31045093 |
gacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctcctaaagcctcaccaaacgaagcttgcggcatataacaag |
31045192 |
T |
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| Q |
101 |
tcttcatcttcacattaaaaacttttagtatatgtaaattaagattcaaaatttaaactcctgcaaacatgttcatataatcctctctttctctgaaata |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
31045193 |
tcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatataaccctctctttctctaaaatt |
31045292 |
T |
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| Q |
201 |
ccattgaattattagtacatattttatccgtatccaattgtcgcaacatacatttaatttaactc |
265 |
Q |
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| T |
31045293 |
ccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaactc |
31045357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 265
Target Start/End: Complemental strand, 172245 - 172015
Alignment:
| Q |
42 |
aaggaaaa-gttgctcttctcctaaagcctcaccaaacgaagcttgc------ggcagataacaagtcttcatcttcacattaaaaacttttagtatatg |
134 |
Q |
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|||||||| |||||||||||| ||||||| |||||||||||||||| | | |||||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
172245 |
aaggaaaatgttgctcttctcttaaagccacaccaaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatg |
172146 |
T |
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| Q |
135 |
taaattaagattcaaaatttaaactcctgcaaacatgttcatataatcctctctttctctgaaataccattgaattattagtacatattttatccgtatc |
234 |
Q |
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||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
172145 |
taaattaag-ttcaaaattcaatctcatgcaaacatgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatc |
172047 |
T |
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| Q |
235 |
caattgtcgca-acatacatttaatttaactc |
265 |
Q |
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|||||||| || |||| ||||||||| ||||| |
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| T |
172046 |
caattgtcacacacattcatttaattaaactc |
172015 |
T |
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