View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_high_23 (Length: 239)
Name: NF11896_high_23
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42453108 - 42453330
Alignment:
| Q |
1 |
tatgcaatattctagttgcgatcaagatttataaactacttgcacaattgtacagttatgtttattgtagttacaattataaatgcgagtgataatattc |
100 |
Q |
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| T |
42453108 |
tatgcaatattctagttgcgatcaagatttataaactacttgcacagttgtacaattatgtttattgtagttacaattataaatgcgagtgataatattc |
42453207 |
T |
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| Q |
101 |
atgatatcaacattattaattacaaaagatacttacataggttttacatatatgtgaaaaggaaattgctacttttagcgaaagaaattcagcgaaaact |
200 |
Q |
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| T |
42453208 |
atgatatcaacattattaattacaaaagatacttacataggttttacatatatgtgaaaaggaaattgctacttttagcgaaagaaattcagcgaaaact |
42453307 |
T |
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| Q |
201 |
tcacgatagctactccatgtatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
42453308 |
tcacgatagctactccatgtatc |
42453330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 24116814 - 24116681
Alignment:
| Q |
1 |
tatgcaatattctagttgcgatcaagatttataaactacttgcacaattgtacagttatgtttattgtagttacaattataaatgcgagtgataatattc |
100 |
Q |
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| T |
24116814 |
tatgcaatattctagttgcgatcaagatttataaactacttccacaactgtacaattatgtttattgtagttacaattataaatgcgagtgataatattc |
24116715 |
T |
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| Q |
101 |
atgatatcaacattattaattacaaaagatactt |
134 |
Q |
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| T |
24116714 |
atgatatcaacgctattaattacaaaagttactt |
24116681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 27129575 - 27129510
Alignment:
| Q |
158 |
aaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctactccatgtatc |
223 |
Q |
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| T |
27129575 |
aaaggaaattgctacttttagcgaaagaaatcgagcgaaaacttcacaatatctactccatgtatc |
27129510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 10410104 - 10410157
Alignment:
| Q |
157 |
aaaaggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagc |
210 |
Q |
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||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
10410104 |
aaaaggaaattgctacttttagcaaaataaattcaacgaaaacttcacgatagc |
10410157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 55016410 - 55016348
Alignment:
| Q |
161 |
ggaaattgctacttttagcgaaagaaattcagcgaaaacttcacgatagctactccatgtatc |
223 |
Q |
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|||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||| |
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| T |
55016410 |
ggaaattggtacttttaatgaaagagttacagcgaaaacttcacgatagctactccatgtatc |
55016348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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