View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_high_4 (Length: 517)
Name: NF11896_high_4
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 47804541 - 47804047
Alignment:
| Q |
18 |
attattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggacaaccggctttccagacttgtctgatcatcgatatcc |
117 |
Q |
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| T |
47804541 |
attattggcattaatggatgcaaaacatccaggttttaatggatgcaaaacatccaagttggacaaccggctttccagacatgtctgatcatcgatatcc |
47804442 |
T |
|
| Q |
118 |
ttgtctgccgaacaannnnnnnnn-catcgtgattttcctttccagatgaatcatctgaatttttcgcaatgtgaaactcgaggagagaatatatctgag |
216 |
Q |
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| T |
47804441 |
ttgtctgccgaacaattttttttttcatcgtgattttcctttctagatgaatcatctgaatttttcgcaatgtgaaactcgagtagagaatatatctgag |
47804342 |
T |
|
| Q |
217 |
acttcaacacagctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgta |
316 |
Q |
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| T |
47804341 |
acttcaacacagctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgta |
47804242 |
T |
|
| Q |
317 |
ttcatatatgagagatcttattccccattgcatcattggttcggtattgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatcca |
416 |
Q |
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| T |
47804241 |
ttcatatatgagagatcttattccccattgcatcattggttcggttttgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccg |
47804142 |
T |
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| Q |
417 |
acaaattccattgaactataccgattctgtttcttcagcttatgcacacctgtatattcttcaatattgttggtatcattttgtttctctgcttc |
511 |
Q |
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| T |
47804141 |
acaaattccattgaactataccgattctgtttcttcagcttatgcacacctgtatattcttcaatattgttggtatcattttgtttctcttcttc |
47804047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 144 - 468
Target Start/End: Complemental strand, 47806958 - 47806634
Alignment:
| Q |
144 |
tcgtgattttcctttccagatgaatcatctgaatttttcgcaatgtgaaactcgaggagagaatatatctgagacttcaacacagctttctttttaaata |
243 |
Q |
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| T |
47806958 |
tcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgtactttgacatgactttctttttaaaga |
47806859 |
T |
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| Q |
244 |
taggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgtattcatatatgagagatcttattcccca |
343 |
Q |
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| T |
47806858 |
ttggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgtattcaaacatgagagattttacatccct |
47806759 |
T |
|
| Q |
344 |
ttgcatcattggttcggtattgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatccaacaaattccattgaactataccgattc |
443 |
Q |
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| T |
47806758 |
tcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatccaacgaattcccctgaactatagcgcttc |
47806659 |
T |
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| Q |
444 |
tgtttcttcagcttatgcacacctg |
468 |
Q |
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|||| ||| ||||||||| ||||| |
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| T |
47806658 |
cgtttgttcggcttatgcatacctg |
47806634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 47807099 - 47807066
Alignment:
| Q |
22 |
ttggcattaatggatgcaaaacatccaggtttta |
55 |
Q |
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| T |
47807099 |
ttggcattaatcgatgcaaaacatccaggtttta |
47807066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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