View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_high_9 (Length: 403)
Name: NF11896_high_9
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 401
Target Start/End: Complemental strand, 138722 - 138323
Alignment:
| Q |
2 |
ccaccaccaccaccctccgaagaggaggatttgttggagtcctttcttcatccttccaacatcacccacaccttctccgaccatcaacttttctggaggg |
101 |
Q |
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| T |
138722 |
ccaccaccaccaccctccgaagaggaggatttgttggagtcctttcttcatccttccaacatcacccacaccttctccgaccatcaacttttctggaggg |
138623 |
T |
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| Q |
102 |
cttcccttgttcctaagaaataccactatccctatgctcgtgtacctaaactcgctttcatgtacctcactaggggacctttacccttgttgccactctg |
201 |
Q |
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| T |
138622 |
cttcccttgttcctaagaaataccactatccctatgctcgtgtacctaaactcgctttcatgtacctcactaggggacctttacccttgttgccactctg |
138523 |
T |
|
| Q |
202 |
ggagagattctttcaaggccactcccatctcttcaacatttatatccacgctcctcctggttatattctcaacgtttcagattcttctcccttttatcga |
301 |
Q |
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| T |
138522 |
ggagagattctttcaaggccactcccatctcttcaacatttatatccacgctcctcctggttatattctcaacgtttcagattcttctcccttttatcga |
138423 |
T |
|
| Q |
302 |
cgcaacatcccaagtcaggtatgcatttcctttgctttttatttgggttggttagaagaattactttaaatgaatgaatcataaactacaacattcttat |
401 |
Q |
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| T |
138422 |
cgcaacatcccaagtcaggtatgcatttcctttgctttttatttgggttgggtagaagaattactttaaatgaatgaatcataaaccacaacattcttat |
138323 |
T |
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