View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11896_low_1 (Length: 652)

Name: NF11896_low_1
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11896_low_1
NF11896_low_1
[»] chr3 (1 HSPs)
chr3 (9-636)||(32729017-32729644)
[»] chr4 (2 HSPs)
chr4 (496-554)||(1083810-1083869)
chr4 (501-554)||(35519705-35519758)
[»] chr5 (3 HSPs)
chr5 (499-554)||(14646366-14646422)
chr5 (496-554)||(19644400-19644458)
chr5 (497-538)||(37040169-37040210)
[»] chr1 (2 HSPs)
chr1 (501-552)||(15343274-15343325)
chr1 (501-554)||(3693993-3694047)
[»] scaffold0072 (1 HSPs)
scaffold0072 (499-552)||(20366-20420)
[»] chr8 (1 HSPs)
chr8 (499-554)||(37627914-37627970)
[»] chr2 (2 HSPs)
chr2 (501-554)||(4445870-4445924)
chr2 (526-554)||(5713257-5713285)
[»] chr6 (1 HSPs)
chr6 (504-559)||(2282443-2282499)


Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 9 - 636
Target Start/End: Original strand, 32729017 - 32729644
Alignment:
Q  9 ataggaggtgggttgtaattatttattaattacgatgatcgatgtcctcacacaacatatagaaaacatcaaaatgaaagctatgtttagtttaaaagtt 108  Q
    |||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32729017 ataggaggagtgttgatattatttattaattacgatgatcgatgtcctcacacaacatatagaaaacatcaaaatgaaagctatgtttagtttaaaagtt 32729116  T
Q  109 taattttaaccacacatacgatacattacgaacaagagatacaagaacttcactatctctctatatcaaacgaaaatgttaaaataaagtttgtcgtgca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  32729117 taattttaaccacacatacgatacattacgaacaagagatacaagaacttcactatctc--tatatcaaacgaaaatgttaaaataaagtttgtcgtgca 32729214  T
Q  209 tatcctactgcctttaactatattgtaaccgtccgtatagtactaggcaccatctcaatggctgagattctcttgattacacgtcattactttgggaatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32729215 tatcctactgcctttaactatattgtaaccgtccgtatagtactaggcaccatctcaatggctgagattctcttgattacacgtcattactttgggaatg 32729314  T
Q  309 tttgctcttacgccattgctcaacgtttccaaggtaattccatttggaagttcaaggtttgtatttgaggaacagttttggtaat-nnnnnnnncaggtt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         ||| ||    
T  32729315 tttgctcttacgccattgctcaacgtttccaaggtaattccatttggaagttcaaggtttgtatttgaggaacagttgtggtaataaaaaaaaacagatt 32729414  T
Q  408 ccctttccgaaatttcaactgttagaacaaaaaattgtttactacttatagtagcatttttaaactcttgaactagaatactctatcagtcctaaaatat 507  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||||    
T  32729415 ccctttccgaaatttcaactgttagaatgaaaaattgtttactacttatagtagcatttttaaactctcgtactagaatactctatccatcctaaaatat 32729514  T
Q  508 aagtaaaaataag-taacataaattgatgtatttaatacaaattttgatctaattcacaatcaataaggtagtactgcacttgctatagccgaagacatg 606  Q
    ||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  32729515 aagcaaaaataagttaacataaattgatctatttaatacaaattttaatctaattcacaatcaataaggtagtactacacatgctatagccgaagacata 32729614  T
Q  607 tgcatatttgatcaaacttcgtaatcaaac 636  Q
    ||||||||||||||||||||||||||||||    
T  32729615 tgcatatttgatcaaacttcgtaatcaaac 32729644  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 496 - 554
Target Start/End: Complemental strand, 1083869 - 1083810
Alignment:
Q  496 gtcctaaaatataagtaaaaata-agtaacataaattgatgtatttaatacaaattttga 554  Q
    ||||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||    
T  1083869 gtcctaaaatataagtaaaaatagattaacataaatttatatatttaatacaaattttga 1083810  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 35519705 - 35519758
Alignment:
Q  501 aaaatataagtaaaaataagtaacataaattgatgtatttaatacaaattttga 554  Q
    |||||||||| |||||| |  |||| |||||||| |||||||||||||||||||    
T  35519705 aaaatataagcaaaaatgataaacaaaaattgatatatttaatacaaattttga 35519758  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 14646366 - 14646422
Alignment:
Q  499 ctaaaatataagtaaaaataagt-aacataaattgatgtatttaatacaaattttga 554  Q
    ||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||    
T  14646366 ctaaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttga 14646422  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 554
Target Start/End: Original strand, 19644400 - 19644458
Alignment:
Q  496 gtcctaaaatataagtaaaaataagtaacataaattgatgtatttaatacaaattttga 554  Q
    ||||||||||||||  |||||||| | |||||| |||||||||||| || |||||||||    
T  19644400 gtcctaaaatataaacaaaaataatttacataagttgatgtatttagtataaattttga 19644458  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 538
Target Start/End: Complemental strand, 37040210 - 37040169
Alignment:
Q  497 tcctaaaatataagtaaaaataagtaacataaattgatgtat 538  Q
    |||||||||||||||||||||  ||||||||| |||||||||    
T  37040210 tcctaaaatataagtaaaaatgggtaacataagttgatgtat 37040169  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 552
Target Start/End: Complemental strand, 15343325 - 15343274
Alignment:
Q  501 aaaatataagtaaaaataagtaacataaattgatgtatttaatacaaatttt 552  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||| ||||    
T  15343325 aaaatttaagtaaaaatgagtaacataagttgatgtatttaatacaattttt 15343274  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 3693993 - 3694047
Alignment:
Q  501 aaaatataagtaaaaataagt-aacataaattgatgtatttaatacaaattttga 554  Q
    ||||| |||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  3693993 aaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttga 3694047  T

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Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 552
Target Start/End: Original strand, 20366 - 20420
Alignment:
Q  499 ctaaaatataagtaaaaataagt-aacataaattgatgtatttaatacaaatttt 552  Q
    ||||||| |||||||||||| || |||||||||| ||||||||||||||||||||    
T  20366 ctaaaatgtaagtaaaaatatgtcaacataaattaatgtatttaatacaaatttt 20420  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 37627914 - 37627970
Alignment:
Q  499 ctaaaatataagtaaaaataagt-aacataaattgatgtatttaatacaaattttga 554  Q
    ||||||| ||||||||||||||| || |||| ||||||||||| |||||||||||||    
T  37627914 ctaaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttga 37627970  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 4445870 - 4445924
Alignment:
Q  501 aaaatataagtaaaaataagt-aacataaattgatgtatttaatacaaattttga 554  Q
    |||||||||| |||||||||| || ||||||||||||||||  ||||||||||||    
T  4445870 aaaatataagcaaaaataagttaatataaattgatgtatttggtacaaattttga 4445924  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 554
Target Start/End: Original strand, 5713257 - 5713285
Alignment:
Q  526 taaattgatgtatttaatacaaattttga 554  Q
    |||||||||||||||||||||||||||||    
T  5713257 taaattgatgtatttaatacaaattttga 5713285  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 559
Target Start/End: Complemental strand, 2282499 - 2282443
Alignment:
Q  504 atataagtaaaaataagt-aacataaattgatgtatttaatacaaattttgatctaa 559  Q
    ||||||| |||||| ||| ||||||||||||||||||| |||||| |||||| ||||    
T  2282499 atataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaa 2282443  T

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