View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_10 (Length: 416)
Name: NF11896_low_10
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 393
Target Start/End: Complemental strand, 42894631 - 42894240
Alignment:
| Q |
3 |
cagagactagcaaggataaaaacaaagcagaggtaagtccatctcattatttttcagtgaccggttttaaaatctattcatgtagtgcttttattttttg |
102 |
Q |
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| T |
42894631 |
cagagactagcaaggataaaaacaaagcagaggtaagtccatctcattatttttcagtgaccggttttaaaatctattcatgtagtgcttttattttttg |
42894532 |
T |
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| Q |
103 |
cactggatgggtggcctgtatagaatgacatctgacagtttgaggtcatgctagtttgatctatgacaatgtcataaaacctcttttggagaaaaaa-ta |
201 |
Q |
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| T |
42894531 |
cactggatgggcggcctatatagaatgacatctgacagtttgaggtcatgctagtttgatctatgacaatgtcataaaacctcttttggagaaaaaaata |
42894432 |
T |
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| Q |
202 |
taggttagtcagtgttgcacatgttgggtaaataaattgcacatacaaaagctgaaaattgatattggtaggattaaatatcacggcatggtagatctat |
301 |
Q |
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| T |
42894431 |
taggttagtcagtgttgcacatgttgggtaaataaattgcacatacaaaagctgaaaattgatattggtaggattaaatatcacggcatggtagatctat |
42894332 |
T |
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| Q |
302 |
tataggcatgcttacattgtatttaacaatatgttgattccagaaactaacccatgacattttaatcacacaaacaatttcaaattgttgtt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42894331 |
tataggcatgcttacattgtatttaacaatatgttgattccagaaactaacccatgacattctaatcacacaaacaatttcaaattgttgtt |
42894240 |
T |
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