View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_12 (Length: 393)
Name: NF11896_low_12
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 7873467 - 7873816
Alignment:
| Q |
16 |
ctatatatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgag |
115 |
Q |
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| T |
7873467 |
ctatatatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgag |
7873566 |
T |
|
| Q |
116 |
attaagggttcccttgcttatgttacacagaatcgcttcgattctcctgtcgtttcaaacatttgggtaatggatcaaagtggatggcacaaaaggtaca |
215 |
Q |
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| T |
7873567 |
attaagggttcccttgcttatgttgtgcagcatcacttcgattctcctgtcgtttcgaacatttgggtaatggatcaaagtggatggcacaaaaagtaca |
7873666 |
T |
|
| Q |
216 |
ac---attggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcata |
312 |
Q |
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| T |
7873667 |
acattattggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcata |
7873766 |
T |
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| Q |
313 |
tgaccatcaaggtaaatcactttgccaatttcaaattgattttcataaga |
362 |
Q |
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| T |
7873767 |
tgaccatcaaggcaactcactttgccaatttcaaattgattttcataaga |
7873816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 7487878 - 7487547
Alignment:
| Q |
21 |
tatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgagattaa |
120 |
Q |
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| T |
7487878 |
tatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgggatggtgttgccgagatcaa |
7487779 |
T |
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| Q |
121 |
gggttcccttgcttatgttacacagaatcgcttcgattctcctgtcgtttcaaacatttgggtaatggatcaaagtggatggcacaaaaggtacaacatt |
220 |
Q |
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| T |
7487778 |
aggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggatggcacaaaaagtgcaacatt |
7487679 |
T |
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| Q |
221 |
ggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcatatgaccatc |
320 |
Q |
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| T |
7487678 |
ggcccacttgtgtcaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccactcacatcgtatgactatc |
7487579 |
T |
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| Q |
321 |
aaggtaaatcactttgccaatttcaaattgat |
352 |
Q |
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|||| |||||||||| |||||||||||||||| |
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| T |
7487578 |
aaggcaaatcactttaccaatttcaaattgat |
7487547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 105 - 352
Target Start/End: Complemental strand, 7495269 - 7495022
Alignment:
| Q |
105 |
atgttgccgagattaagggttcccttgcttatgttacacagaatcgcttcgattctcctgtcgtttcaaacatttgggtaatggatcaaagtggatggca |
204 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||| | || || |||||||||| | ||||||||||||||||||||||||||||| |
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| T |
7495269 |
atgttgccgagatcaagggttcccttgcttatgttgtgcagaatcacgtcaatgctcctgtcgtcttgcacatttgggtaatggatcaaagtggatggag |
7495170 |
T |
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| Q |
205 |
caaaaggtacaacattggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctc |
304 |
Q |
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| T |
7495169 |
aaaaatgtataacattggcccagttttttcaatgtttcgcatgtttggcctttggaagaatagcaatcaactccttggaggaaagtttggaaaaccgctc |
7495070 |
T |
|
| Q |
305 |
aaatcatatgaccatcaaggtaaatcactttgccaatttcaaattgat |
352 |
Q |
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| |||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
7495069 |
acatcatatgaccatcaaggcaactcactttgccaatttcaaattgat |
7495022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 352
Target Start/End: Complemental strand, 7474849 - 7474673
Alignment:
| Q |
176 |
atttgggtaatggatcaaagtggatggcacaaaaggtacaacattggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaac |
275 |
Q |
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||||||||||||||||| ||||||||| | |||| |||||||||| || || |||| |||||| ||||||| ||| |||||||||||||| ||| ||| |
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| T |
7474849 |
atttgggtaatggatcatagtggatgggagaaaaagtacaacattagctcaattgtgccaatgtttcgtatgggcggtctttggaagaatggtgatcaac |
7474750 |
T |
|
| Q |
276 |
tccttggaggaaagtttggagaaccgctcaaatcatatgaccatcaaggtaaatcactttgccaatttcaaattgat |
352 |
Q |
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| T |
7474749 |
tccttggaggaaaggatggaaagtccctcgcatcatatgaccatgaaggcaactcactttgccaatttcaaattgat |
7474673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 352
Target Start/End: Original strand, 6944323 - 6944502
Alignment:
| Q |
176 |
atttgggtaatggatca---aagtggatggcacaaaaggtacaacattggcccacctgtgt-caatgtctcgtatgctcggcctttggaagaatggcgat |
271 |
Q |
| |
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||||||||||||||||| || ||||||| | |||| ||||||||||| ||||||| ||| |||| | ||| ||| ||| ||||||||||| || ||| |
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| T |
6944323 |
atttgggtaatggatcatcgaaatggatgggagaaaaagtacaacattgtcccacctttgttcaattt-tcgaatgtgcggtctttggaagaacggggat |
6944421 |
T |
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| Q |
272 |
gaactccttggaggaaagtttggagaaccgctcaaatcatatgaccatcaaggtaaatcactttgccaatttcaaattgat |
352 |
Q |
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| T |
6944422 |
caactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgccaatttcaaattgat |
6944502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 6944174 - 6944237
Alignment:
| Q |
21 |
tatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaaga |
84 |
Q |
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|||||||| ||||||||||| | || |||||| ||||||||||||||||||| |||| |||||| |
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| T |
6944174 |
tatgctttaactttcgcaacgatcaatttcaccaactcagagggccaaccttatcagctgaaga |
6944237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 7474996 - 7474880
Alignment:
| Q |
21 |
tatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgagattaa |
120 |
Q |
| |
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|||||||| ||||||| ||||| || |||||| |||| ||||| |||||||||||||| ||||||| |||||| | ||||| ||||||||||| || |
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| T |
7474996 |
tatgctttaactttcgaaacaatcaatttcaccaact--gaggggcaaccttctcagttaaagaccgatgctttctatgggatgacgttgccgagatcaa |
7474899 |
T |
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| Q |
121 |
gggttcccttgcttatgtt |
139 |
Q |
| |
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| T |
7474898 |
aggctccctttcttatgtt |
7474880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 6840594 - 6840561
Alignment:
| Q |
26 |
tttgactttcgcaacaaccagtttcacgaactca |
59 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
6840594 |
tttgactttcgcaacaatcagtttcacgaactca |
6840561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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