View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_16 (Length: 311)
Name: NF11896_low_16
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_16 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 27 - 311
Target Start/End: Complemental strand, 31045947 - 31045664
Alignment:
| Q |
27 |
tgaagagaaaaacgaaagtctcatgtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaa |
126 |
Q |
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| T |
31045947 |
tgaagagaaaaacgaaagtttcatgtgaaggttacaagagaaaagcttcaatatataaaggaaatactaatccaattccaaatccaacaagttgcaggaa |
31045848 |
T |
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| Q |
127 |
ggtttatctctctcacacacatttagttggctgtaccttttttgtatgatagttaacaggtgatagagtgagttgtgtgggcatttggtaaagtgattaa |
226 |
Q |
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| T |
31045847 |
ggtttatctctctctcacacatttagttggctgtaccttttt-gtatgatagttaacaggtgatagagtgagttgtgtgggcatttggtaaagtgattaa |
31045749 |
T |
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| Q |
227 |
caatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattccta |
311 |
Q |
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| T |
31045748 |
caatgccatcacactaaaaattagatactcatatatattctactatcaactatgtgtccccgatgcaaatttaaagcaattccta |
31045664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 31069924 - 31069850
Alignment:
| Q |
75 |
caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacacatt |
149 |
Q |
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| T |
31069924 |
caatatctgaagcaaatactaatccaattccaaatccaacaagtttcaggaaggtctatctctcacacacacatt |
31069850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 31035429 - 31035373
Alignment:
| Q |
83 |
aaaggaaatactaatccaattccaaatcaaacaagttgcaggaaggtttatctctct |
139 |
Q |
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| T |
31035429 |
aaaggaaatactaattcaattccaaatccaacaagtttcaggaaggtctatctctct |
31035373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 31080545 - 31080494
Alignment:
| Q |
96 |
atccaattccaaatcaaacaagttgcaggaaggtttatctctctcacacaca |
147 |
Q |
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| T |
31080545 |
atccaattccaaatccaacaagctgtacgaaggtttatctctctcacacaca |
31080494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 31110457 - 31110404
Alignment:
| Q |
75 |
caatatataaaggaaatactaatccaattccaaatcaaacaagttgcaggaagg |
128 |
Q |
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| T |
31110457 |
caatatctaaaggaaatactaattcaattccaaatccaacaagcagcaggaagg |
31110404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 170789 - 170904
Alignment:
| Q |
28 |
gaagagaaaaacgaaagtctcatgtgaaggttacaagagaa----aagcttcaatatataaaggaaatactaatccaattccaaatcaaacaagttgcag |
123 |
Q |
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| T |
170789 |
gaagagaaaaaccaaagtctcatgtgaaggttacaagagaagaagaagcttcaatatctaaagg------------aattccaaatccaacaagctgcag |
170876 |
T |
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| Q |
124 |
gaaggtttatctctctcacacacattta |
151 |
Q |
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| T |
170877 |
aaaggtttatctctctcgcacatattta |
170904 |
T |
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