View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_24 (Length: 265)
Name: NF11896_low_24
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_24 |
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| [»] chr7 (7 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 47268195 - 47267941
Alignment:
| Q |
11 |
cacagacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
110 |
Q |
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| T |
47268195 |
cacaaacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
47268096 |
T |
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| Q |
111 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47268095 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggccc |
47267996 |
T |
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| Q |
211 |
agccccactttttgcagctccaccatacacggcctcaccccatccaaaatccact |
265 |
Q |
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| T |
47267995 |
agccccactttttgcagctccaccatacacggcctcaccccatccaaaatccact |
47267941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 47284133 - 47283906
Alignment:
| Q |
37 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
136 |
Q |
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||||||||||||||| ||| | | | |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| || || |
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| T |
47284133 |
atgacaaaactagga-ccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47284035 |
T |
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| Q |
137 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccat |
236 |
Q |
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| T |
47284034 |
attagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccaccttttaccactccaccat |
47283935 |
T |
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| Q |
237 |
acacggcctcaccccatccaaaatccact |
265 |
Q |
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| T |
47283934 |
acaccgcctcaccccatccgaaattcact |
47283906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 265
Target Start/End: Original strand, 47298719 - 47298914
Alignment:
| Q |
70 |
attttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctaca |
169 |
Q |
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|||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||||| || | |
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| T |
47298719 |
attttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttata |
47298818 |
T |
|
| Q |
170 |
ttcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacacggcctcaccccatccaaaatccact |
265 |
Q |
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||| ||| ||||| |||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||| | ||||||||||| |||| |||| |
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| T |
47298819 |
ttcttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttgcaactccaccatacaccccttcaccccatccgaaattcact |
47298914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 47279540 - 47279313
Alignment:
| Q |
37 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
136 |
Q |
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|||||||||||||| ||| ||| | |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| || || |
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| T |
47279540 |
atgacaaaactaggc-ccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47279442 |
T |
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| Q |
137 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccat |
236 |
Q |
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| ||||||||| |||||||||||||||||| ||||| |||||||||||||| | | ||||| ||| |||||||| ||| ||| ||| | | ||||||| |
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| T |
47279441 |
attagtaatatcaaaccttcttctccttctgcattcttatgtgggatgataaacgttgctctaggtaaaggcccggccacacaatttaccaccccaccat |
47279342 |
T |
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| Q |
237 |
acacggcctcaccccatccaaaatccact |
265 |
Q |
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|||| ||||||||||||||||||| |||| |
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| T |
47279341 |
acaccgcctcaccccatccaaaattcact |
47279313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 63 - 265
Target Start/End: Original strand, 47292105 - 47292307
Alignment:
| Q |
63 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
162 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||| |
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| T |
47292105 |
taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctcc |
47292204 |
T |
|
| Q |
163 |
ttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacacggcctcaccccatccaaaatcc |
262 |
Q |
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| || |||| ||| ||||| |||||||| || ||||||||| | |||||||||| ||||||| ||||||||||||| | |||||||| ||||||| | |
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| T |
47292205 |
atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcaccccaaccaaaattc |
47292304 |
T |
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| Q |
263 |
act |
265 |
Q |
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||| |
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| T |
47292305 |
act |
47292307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 47243239 - 47243111
Alignment:
| Q |
63 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
162 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | ||||||| || ||||||||||| |
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| T |
47243239 |
taggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggtaatattaacccttcttctcc |
47243140 |
T |
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| Q |
163 |
ttctacattcatatgtgggatgatatagg |
191 |
Q |
| |
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|| | ||||| |||| |||| ||||||| |
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| T |
47243139 |
ttttgcattcttatgcgggacaatatagg |
47243111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 47257366 - 47257164
Alignment:
| Q |
63 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
162 |
Q |
| |
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|||| |||||||| ||||||||||| ||||||||||| ||| |||||||||||||| ||||| | ||| |||| | ||||||| || ||||||||||| |
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| T |
47257366 |
taggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatatcttcaggaggcaagcaaattggtaatattaacccttcttctcc |
47257267 |
T |
|
| Q |
163 |
ttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacacggcctcaccccatccaaaatcc |
262 |
Q |
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|| | ||||| |||| | || | | ||| | | ||| |||||| ||| |||| |||||| |||||||||||||| || ||||||||||| |||| | |
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| T |
47257266 |
ttttgcattcttatgcgtgacaagaaaggttcccccaagaaaagatccaattccaccttttgctgctccaccatacacagcttcaccccatccgaaattc |
47257167 |
T |
|
| Q |
263 |
act |
265 |
Q |
| |
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||| |
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| T |
47257166 |
act |
47257164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 20519901 - 20519713
Alignment:
| Q |
77 |
ttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcatat |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| | | |||| ||| | ||||||| ||||||| |||| || | |||| ||| |
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| T |
20519901 |
ttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaatattaaacctttttcttgttttgaattcttat |
20519802 |
T |
|
| Q |
177 |
gtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacacggcctcaccccatccaaaatccact |
265 |
Q |
| |
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|||||| || || ||||||| ||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||| |
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| T |
20519801 |
gtgggacaatgatggttgctccacgaaaacccccagccccagcttttgcaactccaccatacttcgcctcaccccatccaaaattcact |
20519713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 32731900 - 32731778
Alignment:
| Q |
69 |
aattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctac |
168 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | | ||||| || ||||||||||||| | | |
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| T |
32731900 |
aattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggaaatattaacccttcttctccttttgc |
32731801 |
T |
|
| Q |
169 |
attcatatgtgggatgatatagg |
191 |
Q |
| |
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|||| |||| |||| ||||||| |
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| T |
32731800 |
attcttatgcgggacaatatagg |
32731778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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