View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_25 (Length: 241)
Name: NF11896_low_25
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36313682 - 36313458
Alignment:
| Q |
1 |
tcatcggtagatatcttattgtttttatgaaacttcttttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgta |
100 |
Q |
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| T |
36313682 |
tcatctgtagatatcttactgtttttatgaaacttcttttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgta |
36313583 |
T |
|
| Q |
101 |
gattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggttggagaaggttgtaatttcacatcactacctaactgatgtct |
200 |
Q |
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| T |
36313582 |
gattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggttggagaaggttgtaatttcacatcactacctaactgatgtct |
36313483 |
T |
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| Q |
201 |
ctcttgaagcccttggtcgatcatg |
225 |
Q |
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| T |
36313482 |
ctcttgaagcccttggtcgatcatg |
36313458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 36326053 - 36325839
Alignment:
| Q |
7 |
gtagatatcttattgtttttatgaaacttcttttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgc |
106 |
Q |
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| T |
36326053 |
gtagatatcttattgttttcatggaacgttttttaatagttctttttaaat-aaattttacagtggcagtcacctactttgcatgcggcttgtaaattgt |
36325955 |
T |
|
| Q |
107 |
tcgaggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggttggagaaggttgtaatttcacatcactacctaactgatgtctctcttg |
206 |
Q |
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| T |
36325954 |
tgggggatgacaaataaaggatttagtgaagccttgagaaagcttccgctgttagagaaggttgacatttcacattcttatctaactgaggtctctcttg |
36325855 |
T |
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| Q |
207 |
aagcccttggtcgatc |
222 |
Q |
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| T |
36325854 |
aagcccttggtcgatc |
36325839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 36327888 - 36327706
Alignment:
| Q |
37 |
ttttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaa |
136 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| |||||| | |||||||||||||| ||||||||| |||||||||||||||||||| |||| |
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| T |
36327888 |
ttttaatacttctttttaatataaattttacagtggcagtcacctactttgcatggggcttgtaaattgctcgaagattacagatgaaggatttactgaa |
36327789 |
T |
|
| Q |
137 |
gctgtgagaaagcttccgcggttggagaaggttgtaatttcacatcactacctaactgatgtctctcttgaagcccttggtcg |
219 |
Q |
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| T |
36327788 |
gccatgagaaagcttccacaattggagaagattgacatttcacattgccacctaaccgatgtttctcttaaagccctaggtcg |
36327706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 36321073 - 36320925
Alignment:
| Q |
10 |
gatatcttattgtttttatgaaacttcttttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcg |
109 |
Q |
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|||| ||||||||||| ||||||| | ||||||||||||||| ||| | ||||||||||||||||| |||||| || ||||| |||||||| ||| | | |
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| T |
36321073 |
gataacttattgttttcatgaaacgttttttaatagttctttctaaat-aaattttacagtggcagtcacctacgttgcatgtggcttgtaagttgtttg |
36320975 |
T |
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| Q |
110 |
aggattacagatgaaggatttagtgaagctgtgagaaagcttccgcggtt |
159 |
Q |
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| T |
36320974 |
gggattacaaataaaggatttagtgaagctgtcagaaagcttccgcggtt |
36320925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 36333715 - 36333589
Alignment:
| Q |
39 |
ttaatagttctttttaattcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagc |
138 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| || ||| || ||||| |||||||| |||| | |||||||||| |||||||| || |||| |
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| T |
36333715 |
ttaatagttctttttaattcaaattttgcagtggcagtcagctacgttgcatgcggcttgtaaattgttgtttgattacagataaaggatttggtaaagc |
36333616 |
T |
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| Q |
139 |
tgtgagaaagcttccgcggttggagaa |
165 |
Q |
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| T |
36333615 |
catgagaaagcttccacagttggagaa |
36333589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 36336340 - 36336285
Alignment:
| Q |
114 |
ttacagatgaaggatttagtgaagctgtgagaaagcttccgcggttggagaaggtt |
169 |
Q |
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| T |
36336340 |
ttacagatgaagaattcagtgatgttgttagaaagcttccgcggttagagaaggtt |
36336285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 16053338 - 16053213
Alignment:
| Q |
53 |
taattcaaattttacagtggcagacacctatgtcgcatggggcttgtagattgctcgaggattacagatgaaggatttagtgaagctgtgagaaagcttc |
152 |
Q |
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||||| ||||||||||||||||| |||||| || |||| || |||||||||||| ||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
16053338 |
taatttaaattttacagtggcagtcacctacgttccatgcggtttgtagattgctatgaaatttcagaagaaggatttagtgaagctgtgaggaagcttc |
16053239 |
T |
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| Q |
153 |
cgcggttggagaaggttgtaatttca |
178 |
Q |
| |
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||| ||| |||||| |||| |||||| |
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| T |
16053238 |
cgctgttagagaagcttgtcatttca |
16053213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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