View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_29 (Length: 215)
Name: NF11896_low_29
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 2106673 - 2106492
Alignment:
| Q |
20 |
aagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatcgaatcaccatgtatcttttttatgaacaatcaaatgca |
119 |
Q |
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| T |
2106673 |
aagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatcaaatcaccatgtatcttttttatgaacaatcaaatgca |
2106574 |
T |
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| Q |
120 |
tactctataaagctaaacaacatataatagaacagacctgattgataacaagttcggagtctccgtagacagtgatgttcct |
201 |
Q |
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| T |
2106573 |
tactctataaagctaaacaacatataatagaacagacctgattgataacaagttcggagtctccgtagacagtgatgttcct |
2106492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 2098212 - 2098128
Alignment:
| Q |
26 |
gggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattatcgaatcaccatgtatcttttttatgaacaat |
111 |
Q |
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| T |
2098212 |
gggatagttccatggttgtttt-aacaaagaaatcgtgtcatcgctcagaattatcgaatcaccatgtatcttttttatgaacaat |
2098128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2098055 - 2098003
Alignment:
| Q |
149 |
gaacagacctgattgataacaagttcggagtctccgtagacagtgatgttcct |
201 |
Q |
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| T |
2098055 |
gaacatacctgattgataacaagttcggaatctccgtagacagtgatgttcct |
2098003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 2042098 - 2042057
Alignment:
| Q |
142 |
tataatagaacagacctgattgataacaagttcggagtctcc |
183 |
Q |
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| T |
2042098 |
tataatagaacaaacctgattgataacaagttctgagtctcc |
2042057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 2082657 - 2082616
Alignment:
| Q |
142 |
tataatagaacagacctgattgataacaagttcggagtctcc |
183 |
Q |
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| T |
2082657 |
tataatagaacaaacctgattgataacaagttccgagtctcc |
2082616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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