View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11896_low_4 (Length: 517)

Name: NF11896_low_4
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11896_low_4
NF11896_low_4
[»] chr4 (5 HSPs)
chr4 (82-501)||(40006546-40006965)
chr4 (12-45)||(40007002-40007035)
chr4 (429-500)||(2069451-2069525)
chr4 (413-502)||(33921202-33921295)
chr4 (431-501)||(48257501-48257575)
[»] chr3 (2 HSPs)
chr3 (430-501)||(53508370-53508441)
chr3 (431-501)||(40487470-40487544)
[»] chr1 (5 HSPs)
chr1 (430-489)||(6217704-6217767)
chr1 (431-501)||(31919138-31919212)
chr1 (413-479)||(48809110-48809179)
chr1 (430-501)||(15431535-15431610)
chr1 (413-457)||(799747-799791)
[»] chr2 (5 HSPs)
chr2 (413-496)||(31128660-31128742)
chr2 (416-458)||(8885559-8885601)
chr2 (431-501)||(12554051-12554125)
chr2 (430-496)||(28533829-28533899)
chr2 (413-457)||(34128602-34128646)
[»] chr7 (2 HSPs)
chr7 (431-497)||(13796802-13796872)
chr7 (431-501)||(40993305-40993379)
[»] chr5 (5 HSPs)
chr5 (431-501)||(34945538-34945612)
chr5 (430-501)||(26877978-26878052)
chr5 (424-461)||(11875525-11875562)
chr5 (431-501)||(11976804-11976878)
chr5 (431-501)||(38597942-38598016)
[»] chr6 (5 HSPs)
chr6 (424-501)||(30608384-30608465)
chr6 (430-494)||(30879594-30879662)
chr6 (430-465)||(32802692-32802727)
chr6 (432-501)||(20225999-20226072)
chr6 (432-501)||(22119983-22120056)
[»] chr8 (3 HSPs)
chr8 (430-501)||(27110332-27110407)
chr8 (431-501)||(23230791-23230865)
chr8 (430-474)||(26469044-26469088)
[»] scaffold0262 (1 HSPs)
scaffold0262 (413-465)||(1728-1780)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 82 - 501
Target Start/End: Complemental strand, 40006965 - 40006546
Alignment:
Q  82 caaattattgagtggaaaatcacacattaagaatggaggagagggatattgcgattcgaactcgtcccaacacatcaaatatccttataaccttttacca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40006965 caaattattgagtggaaaatcacacattaagaatggaggagagggatattgcgattcgaactcgccccaacacatcaaatatccttataaccttttacca 40006866  T
Q  182 tacgagttatacttatgagataaaattttgaactttatattaatacaaacataaatgtcacaattaattaaatgatagtatacactgtaaaaaatttaca 281  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40006865 tacgagctatacttacgagataaaattttgaactttatattaatacaaacataaatgtcacaattaattaaatgatagtatacactgtaaaaaatttaca 40006766  T
Q  282 cacaatcaatcatatcctaatattatgccactttgttaaattagttcataaaacatctaaacagttatctaagtggtgaaatgtgattgaatatacatgt 381  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40006765 cacaatcaatcatatcctactattatgccactttgttaaattagttcataaaacatctaaacagttatctaagtggtgaaatgtgattgaatatacatgt 40006666  T
Q  382 gtcatgtaattgtggagaactggatgtacgtgtatttcaattacttctattttatcatattatttataggtattttatcgttgttattaacttggatgtt 481  Q
    |||||||||| ||||||||| |||||||| ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  40006665 gtcatgtaatcgtggagaaccggatgtacatgtatttcaattatttttattttatcattttatttataggcattttatcgttgttattaacttggatgtt 40006566  T
Q  482 tcgagtttgttcgcaaattc 501  Q
    ||||||||||||||| ||||    
T  40006565 tcgagtttgttcgcagattc 40006546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 40007035 - 40007002
Alignment:
Q  12 agagaccttatggaagatgtttatagatatgtac 45  Q
    ||||||||||||||||||||||||||||||||||    
T  40007035 agagaccttatggaagatgtttatagatatgtac 40007002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 500
Target Start/End: Complemental strand, 2069525 - 2069451
Alignment:
Q  429 tattttatcatattatttataggtattttatcgtt---gttattaacttggatgtttcgagtttgttcgcaaatt 500  Q
    |||||||||||||||||| || | |||||| ||||   |||||||||||||||| || ||| |||||||||||||    
T  2069525 tattttatcatattatttgtatgcattttaccgtttatgttattaacttggatgctttgagattgttcgcaaatt 2069451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 502
Target Start/End: Original strand, 33921202 - 33921295
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattct 502  Q
    |||||||| | ||||  ||||||||||||||||| |||| ||| ||| |||||    ||||||||||||||||  ||||||||||||| |||||    
T  33921202 gtatttcagtgacttagattttatcatattatttgtaggcattgtatagttgtatgctattaacttggatgttgtgagtttgttcgcatattct 33921295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Complemental strand, 48257575 - 48257501
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| ||||||||||  ||||||    ||||||||||||| ||  ||||||||||||| ||||    
T  48257575 ttttatcatattatttgtaggtattttgccgttgtatgctattaacttggattttgtgagtttgttcgcagattc 48257501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 501
Target Start/End: Original strand, 53508370 - 53508441
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgttattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||||||||||||  || |||||||||| ||||    
T  53508370 attttatcatattatttgtaggcattttgtcgttgctattaacttggatgttgtgattttgttcgcagattc 53508441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 40487470 - 40487544
Alignment:
Q  431 ttttatcatattatttataggtattttatcgt----tgttattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| |||||  |||    |||||||||||||| ||||  ||||||||||||||||||    
T  40487470 ttttatcatattatttgtaggcattttgccgttatatgttattaacttgggtgttgtgagtttgttcgcaaattc 40487544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 489
Target Start/End: Complemental strand, 6217767 - 6217704
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagttt 489  Q
    ||||||||||||||||| ||||||||||| ||||||    ||||||||||||||||||||||||    
T  6217767 attttatcatattatttgtaggtattttaccgttgtatgctattaacttggatgtttcgagttt 6217704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 31919138 - 31919212
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||  ||||| |||||||    |||||||||||||||| |||||||||||||| ||||    
T  31919138 ttttatcatattatttgtagacattttgtcgttgtatgctattaacttggatgttgcgagtttgttcgcagattc 31919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 48809179 - 48809110
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtatttt---atcgttgttattaacttggatg 479  Q
    |||||||| | ||||  ||||||||||||||||||||||||||||   || ||||||||| |||||||||    
T  48809179 gtatttcagtcactttaattttatcatattatttataggtattttgtcattgttgttattcacttggatg 48809110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 15431610 - 15431535
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||||| |||  |||||||||||||    |||| |||||||||||  ||||||||||||| ||||    
T  15431610 attttatcatattatttgtagacattttatcgttgtatgctattcacttggatgttgtgagtttgttcgcagattc 15431535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 799791 - 799747
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtatttt 457  Q
    |||||||| ||||||| ||||||||||||||||| ||| ||||||    
T  799791 gtatttcacttacttcaattttatcatattatttgtagatatttt 799747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 496
Target Start/End: Complemental strand, 31128742 - 31128660
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtattttatcgttgttattaacttggatgtttcgagtttgttcgca 496  Q
    |||||||| | |||| |||||||||||||||||| |||| |||||  ||||  ||||||||||||||||  |||||||||||||    
T  31128742 gtatttcagtgacttatattttatcatattatttgtaggcattttgccgtt-atattaacttggatgttgtgagtttgttcgca 31128660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 8885601 - 8885559
Alignment:
Q  416 tttcaattacttctattttatcatattatttataggtatttta 458  Q
    ||||||||||||  |||||||||||||||||||| ||||||||    
T  8885601 tttcaattactttgattttatcatattatttatatgtatttta 8885559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Complemental strand, 12554125 - 12554051
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| ||||| |||||||    ||||||||||| ||||  ||||||||||||| ||||    
T  12554125 ttttatcatattatttgtaggcattttgtcgttgtatgatattaacttgggtgttgtgagtttgttcgcagattc 12554051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 496
Target Start/End: Complemental strand, 28533899 - 28533829
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgca 496  Q
    ||||||||||||||||| |||||||||| |||||||    ||||||||||  ||||  |||||||||||||    
T  28533899 attttatcatattatttgtaggtattttgtcgttgtatgctattaacttgagtgttgtgagtttgttcgca 28533829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 34128646 - 34128602
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtatttt 457  Q
    ||||||| |||||||  |||||||||||||||||||||| |||||    
T  34128646 gtatttcgattacttggattttatcatattatttataggcatttt 34128602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 497
Target Start/End: Complemental strand, 13796872 - 13796802
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaa 497  Q
    |||||||||||||||| |||| ||||| |||||||    ||||||||||||||||  ||||||||||||||    
T  13796872 ttttatcatattatttgtaggcattttgtcgttgtatgctattaacttggatgttgtgagtttgttcgcaa 13796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 40993305 - 40993379
Alignment:
Q  431 ttttatcatattatttataggtattttatcgt----tgttattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| ||||| ||||    |||||||||||||| ||||  ||||||||||||| ||||    
T  40993305 ttttatcatattatttgtaggcattttgtcgttgtatgttattaacttgggtgttgtgagtttgttcgcagattc 40993379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 34945538 - 34945612
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||||||||| ||||| |||||||    ||||||||||| ||||  ||||||||||||| ||||    
T  34945538 ttttatcatattatttataggcattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattc 34945612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 26878052 - 26877978
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt---tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||||| |||| | ||| |||||||   ||||||||||||||||  ||||||||||||| ||||    
T  26878052 attttatcatattatttgtaggcactttgtcgttgtatctattaacttggatgttgtgagtttgttcgcagattc 26877978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 11875525 - 11875562
Alignment:
Q  424 acttctattttatcatattatttataggtattttatcg 461  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  11875525 acttcaattttatcatattatttataggcattttatcg 11875562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Complemental strand, 11976878 - 11976804
Alignment:
Q  431 ttttatcatattatttataggtattttatcgt----tgttattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| |||||  |||    |||||||||||||||||||  ||||||||||||| ||||    
T  11976878 ttttatcatattatttgtaggcattttcccgttttatgttattaacttggatgttgtgagtttgttcgcagattc 11976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 38597942 - 38598016
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| |||||  ||||||    ||||||||||| ||||  ||||||||||||||||||    
T  38597942 ttttatcatattatttgtaggcattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcaaattc 38598016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 30608465 - 30608384
Alignment:
Q  424 acttctattttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||| |||||||||||||||||| |||| |||||| ||||||    ||||||||||||||||  ||| ||||| ||||||||    
T  30608465 acttatattttatcatattatttgtaggcattttaccgttgtatgctattaacttggatgttgtgagattgtttgcaaattc 30608384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 30879662 - 30879594
Alignment:
Q  430 attttatcatattatttataggtattttatcgt----tgttattaacttggatgtttcgagtttgttcg 494  Q
    ||||||||||||||||||| |||||||| ||||    ||||||||||||||||| |  |||||||||||    
T  30879662 attttatcatattatttattggtattttgtcgttatatgttattaacttggatgatgtgagtttgttcg 30879594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 465
Target Start/End: Original strand, 32802692 - 32802727
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt 465  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32802692 attttatcatattatttgtaggtattttatcgttgt 32802727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 501
Target Start/End: Original strand, 20225999 - 20226072
Alignment:
Q  432 tttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||| |||| ||||| |||||||    ||||||||||| | ||  ||||||||||||||||||    
T  20225999 tttatcatattatttgtaggcattttgtcgttgtatgctattaacttgggtattgtgagtttgttcgcaaattc 20226072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 501
Target Start/End: Original strand, 22119983 - 22120056
Alignment:
Q  432 tttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||| |||| ||||| |||||||    ||||||||||| | ||  ||||||||||||||||||    
T  22119983 tttatcatattatttgtaggcattttgtcgttgtatgctattaacttgggtattgtgagtttgttcgcaaattc 22120056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 501
Target Start/End: Complemental strand, 27110407 - 27110332
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    ||||||||||||||||| |||  |||||||||||||    ||||||||||| ||||  ||||||||||||| ||||    
T  27110407 attttatcatattatttgtagacattttatcgttgtatgctattaacttgggtgttgtgagtttgttcgcatattc 27110332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 23230791 - 23230865
Alignment:
Q  431 ttttatcatattatttataggtattttatcgttgt----tattaacttggatgtttcgagtttgttcgcaaattc 501  Q
    |||||||||||||||| |||| ||||| |||||||    ||||||||||| ||||  ||||||||||||| ||||    
T  23230791 ttttatcatattatttgtaggcattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattc 23230865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 26469088 - 26469044
Alignment:
Q  430 attttatcatattatttataggtattttatcgttgttattaactt 474  Q
    ||||||||||||||||| |||||||||| ||||| | ||||||||    
T  26469088 attttatcatattatttgtaggtattttgtcgttataattaactt 26469044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 1780 - 1728
Alignment:
Q  413 gtatttcaattacttctattttatcatattatttataggtattttatcgttgt 465  Q
    ||||||| || |||| |||||||||||||||||| |||| |||||| ||||||    
T  1780 gtatttcgatgacttatattttatcatattatttgtaggcattttaccgttgt 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University