View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_7 (Length: 448)
Name: NF11896_low_7
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_7 |
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| [»] scaffold1338 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 5572208 - 5571776
Alignment:
| Q |
1 |
gatgagtagcatctttgcaaaattattgttctcaactttgtgcatgctctttgtgctcaaagcagaatctttggtatttgcagaccaaagacttgctata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572208 |
gatgagtagcatctttgcaaaattattgttctcaactttgtgcatgctctttgtgctcaaagcagaatctttggtatttgcagaccaaagacttgctata |
5572109 |
T |
|
| Q |
101 |
gtgtatccagtgatacaaaaattcaagtccttgattacttcagatccattaggtgttacaaaatcatggataggttctgatatatgcaactacaaaggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5572108 |
gtgtatccagtgatacaaaaattcaagtccttgattacttcagatccattaggtgttacaaaatcatggataggttctgatatatgcaactacaaaggat |
5572009 |
T |
|
| Q |
201 |
tctactgtgatcatccaccagataacaactctgctattgctttagcttcaattgatttcaatggttttcaactaagtgcttctactcttaatggttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572008 |
tctactgtgatcatccaccagataacaactctgctattgctttagcttcaattgatttcaatggttttcaactaagtgcttctactcttaatggttttat |
5571909 |
T |
|
| Q |
301 |
tgataaacttcctgatattgcactttttcatgcaaattccaacaatttcattggcacaatcacttctcaaatttctaaacttccttatctttatgagctt |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5571908 |
tgataaacttcctgatattgctctttttcatgcaaattccaacaatttcattggcacaatcacttctcaaatttctaaacttccttatctttatgagctt |
5571809 |
T |
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| Q |
401 |
gatttaagtaataacaaattttctggtcctttt |
433 |
Q |
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| T |
5571808 |
gatttaagtaataacaaattttctggtcctttt |
5571776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 64 - 433
Target Start/End: Original strand, 32357979 - 32358348
Alignment:
| Q |
64 |
agaatctttggtatttgcagaccaaagacttgctatagtgtatccagtgatacaaaaattcaagtccttgattacttcagatccattaggtgttacaaaa |
163 |
Q |
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|||||||||||| |||||| |||||||||||| | |||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
32357979 |
agaatctttggtgtttgcaaaccaaagacttgttgtagtgtatccagtgattcaaaaattcgagtccttggttacttcagatccattaggtgttgcaaat |
32358078 |
T |
|
| Q |
164 |
tcatggataggttctgatatatgcaactacaaaggtttctactgtgatcatccaccagataacaactctgctattgctttagcttcaattgatttcaatg |
263 |
Q |
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|||||| ||||||||||| |||||| ||| | || ||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
32358079 |
tcatgggtaggttctgatgtatgcagctatattggattccactgtgataatccaccagataacaactctactattgctttaatctcaattgatttcaatg |
32358178 |
T |
|
| Q |
264 |
gttttcaactaagtgcttctactcttaatggttttattgataaacttcctgatattgcactttttcatgcaaattccaacaatttcattggcacaatcac |
363 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||||||| |
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| T |
32358179 |
gtttccaactaagtgctcctacccttaatggttttattgataaacttcctgatattgcttttttccatgcaaattccaataattctattggcacaatcac |
32358278 |
T |
|
| Q |
364 |
ttctcaaatttctaaacttccttatctttatgagcttgatttaagtaataacaaattttctggtcctttt |
433 |
Q |
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| T |
32358279 |
atctcaaatcactaaacttccttatatttatgagcttgattttagccacaacaaattttcaggtcctttt |
32358348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 64 - 396
Target Start/End: Original strand, 7516880 - 7517216
Alignment:
| Q |
64 |
agaatctttggtatttgcagaccaaagacttgctatagtgtatccagtgatacaaaaattcaagtccttgattacttcagatccattaggtgttacaaaa |
163 |
Q |
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||||||||||||||||| ||||||||||||| ||||||| ||| |||||| |||| ||||| ||||||||||||||| ||||| |||| ||| ||| |
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| T |
7516880 |
agaatctttggtatttgaagaccaaagacttcctatagt--atctagtgatt-aaaatttcaaaaccttgattacttcaggtccatc-ggtgatacgaaa |
7516975 |
T |
|
| Q |
164 |
tcatggataggttct---gatatatgcaactacaaaggtttctactgtgatcatccaccagataacaactctgctattgctttagcttcaattgatttca |
260 |
Q |
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| |||| |||||| | |||||||||| ||| |||| ||||| ||||| | ||||||| |||||| | |||||||||| ||| ||||||||||||| |
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| T |
7516976 |
ttatgggtaggttattatgatatatgcagctatgaaggattctattgtgaaaacccaccaggtaacaaattcgctattgcttaagcctcaattgatttca |
7517075 |
T |
|
| Q |
261 |
atggttttcaactaagtgcttctactcttaatggttttattgataaacttcctgatattgcacttttt-----catgcaaattccaacaatttcattggc |
355 |
Q |
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|| |||| ||||||| |||| |||| ||| ||||||||||| |||||||||||||| || | ||| || ||||||||| ||| ||||||||||||| |
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| T |
7517076 |
atagtttccaactaaatgctcctacccttgatggttttattaataaacttcctgatgttactcttattttatccatgcaaataccaccaatttcattggc |
7517175 |
T |
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| Q |
356 |
acaatcacttctcaaatttctaaacttccttatctttatga |
396 |
Q |
| |
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|||||||| |||||||| | |||||||||||||||||||| |
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| T |
7517176 |
acaatcacatctcaaatcaccaaacttccttatctttatga |
7517216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 9372966 - 9373166
Alignment:
| Q |
64 |
agaatctttggtatttgcagaccaaagacttgctatagtgtatccagtgatacaaaaattcaagtccttgattacttcagatccattaggtgttacaaaa |
163 |
Q |
| |
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|||||||||||| |||| ||||||||||||| | |||||| | |||||| |||| ||||| ||||||||||||||| |||||| |||| ||| ||| |
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| T |
9372966 |
agaatctttggtttttgaagaccaaagacttcttgtagtgtct--agtgatt-aaaatttcaaaaccttgattacttcaggtccattcggtgatacgaaa |
9373062 |
T |
|
| Q |
164 |
tcatggataggttctgatatatgcaactacaaaggtttctactgtgatcatccaccagataacaactctgctattgctttagcttcaattgatttcaatg |
263 |
Q |
| |
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|||||| |||||| ||||||||||||||| |||| ||||||||||| | ||||||| |||||| || | |||||||||||| ||||||||||||||| |
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| T |
9373063 |
tcatgggtaggttatgatatatgcaactatgaaggattctactgtgaaaacccaccaggtaacaaatccgttattgctttagcctcaattgatttcaata |
9373162 |
T |
|
| Q |
264 |
gttt |
267 |
Q |
| |
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|||| |
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| T |
9373163 |
gttt |
9373166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1338 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold1338
Description:
Target: scaffold1338; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 339 - 261
Alignment:
| Q |
129 |
ccttgattacttcagatccattaggtgttacaaaatcatggataggttctgatatatgcaactacaaaggtttctactg |
207 |
Q |
| |
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||||||||| ||||| |||||| |||| |||||||||| || |||||||||||||||||| ||| ||||| |||||||| |
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|
| T |
339 |
ccttgattaattcaggtccattgggtgatacaaaatcacgggtaggttctgatatatgcagctataaaggattctactg |
261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1338; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 209 - 147
Alignment:
| Q |
289 |
taatggttttattgataaacttcctgatattgcactttttcatgcaaattccaacaatttcat |
351 |
Q |
| |
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||||||||||||||||||||| ||||||||| | ||| | |||||||| ||||||||||||| |
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| T |
209 |
taatggttttattgataaactgcctgatattactcttatcaatgcaaataccaacaatttcat |
147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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