View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_8 (Length: 429)
Name: NF11896_low_8
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 24846170 - 24846570
Alignment:
| Q |
17 |
aattgtttaaatttctcttataagtttctgctgactactatattaatagtcttggttagtttcaatttgtgcaatttaatgctttattttttcgtnnnnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24846170 |
aattgtttaaatttctcttataagtttctgctgactactatattaatagtcttggttagtttcaatttgtgcaatttaatgctttattttttcgtcaaaa |
24846269 |
T |
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| Q |
117 |
nnnnnnngatactttattttttagtgttgcaaactttgaccccctccaattagctttatgtttttcatattataatgtgattcagcttctagtatgtttg |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24846270 |
aaaaaa-gatgctttattttttagtgttgcaaactttgaccccctccaattagctttatgtttttcatattataatgtgattaagcttcaagtatgtttg |
24846368 |
T |
|
| Q |
217 |
taattgtgattcagattataatgtgtatgtttaatacctagactaatgtttgaataatgtaggtccaagaccttcatttcattatccgaataaccggtta |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
24846369 |
taattgtgattcagattataatgtgtatgtttcatacctagactaatgtttgaataatgtaggtccatgaacttcatttcattatccgaataaccggtta |
24846468 |
T |
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| Q |
317 |
tatgtttcnnnnnnnnnnnnngttgcactacttgatcacaaaattcaatgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttc |
416 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24846469 |
tatgtttctttttggttttttgttgcactacttgatcacaaaattcagtgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttc |
24846568 |
T |
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| Q |
417 |
tt |
418 |
Q |
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|| |
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| T |
24846569 |
tt |
24846570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 4540985 - 4541076
Alignment:
| Q |
17 |
aattgtttaaatttctcttataagtttctgctgactactatattaatagtcttggttagtttcaatttgtgcaatttaatgctttatttttt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4540985 |
aattgttttaatttctcttataagtttctgctgactactatatttatagtcttggttagtttcaatttgtgcaatttaatgcttgatttttt |
4541076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 4541072 - 4541133
Alignment:
| Q |
133 |
ttttttagtgttgcaaactttgaccccctccaattagctttatgtttttcatattataatgt |
194 |
Q |
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| T |
4541072 |
ttttttagtgttgcaaactttgaccccctccaattagctttatgtttttcagattataatgt |
4541133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 4541131 - 4541224
Alignment:
| Q |
215 |
tgtaattgtgattcagattataatgtgtatgtttaatacctagactaatgtttgaataatgtaggtccaagaccttcatttcattatccgaataa |
309 |
Q |
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|||| |||||||||||||| |||||| ||||||| ||| ||||||||||||||||||| || |||||||||| ||||||| |||||| |||||| |
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| T |
4541131 |
tgtatttgtgattcagattgtaatgtatatgtttcctacatagactaatgtttgaataa-gttggtccaagactttcatttgattatctgaataa |
4541224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 133 - 418
Target Start/End: Complemental strand, 8354218 - 8353933
Alignment:
| Q |
133 |
ttttttagtgttgcaaactttgaccccctccaattagctttatgtttttcatattataatgtgattcagcttctagtatgtttgtaattgtgattcagat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354218 |
ttttttagtgttgcaaactttgaccccctccaattagctttatgtttttcatattataatgtgattcagcttctagtatgtttgtaattgtgattcagat |
8354119 |
T |
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| Q |
233 |
tataatgtgtatgtttaatacctagactaatgtttgaataatgtaggtccaagaccttcatttcattatccgaataaccggttatatgtttcnnnnnnnn |
332 |
Q |
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| T |
8354118 |
tataatgtgtatgtttcatacctagactaatgtttgaataatgtaggtccaagaccttcatttgattatccgaataaccggttatctgtttctttttggt |
8354019 |
T |
|
| Q |
333 |
nnnnngttgcactacttgatcacaaaattcaatgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttctt |
418 |
Q |
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| ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8354018 |
tttttgctgcactacttgatcacaaatttcagtgactttcaattggcatgtttggggagtttctttctgcataaaagtgttttctt |
8353933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 8354281 - 8354214
Alignment:
| Q |
41 |
tttctgctgactactatattaatagtcttggttagtttcaatttgtgcaatttaatgctttatttttt |
108 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
8354281 |
tttctgctgactactatattaatagtcttgattagtttcagtttgtgcaatttaatgctttatttttt |
8354214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 26466378 - 26466300
Alignment:
| Q |
340 |
tgcactacttgatcacaaaattcaatgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttctt |
418 |
Q |
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|||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26466378 |
tgcagtacttgatcacaaatttcagtgactttcaattggcatgtttggggagtttctttctgcatgaaagtgttttctt |
26466300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 14370676 - 14370618
Alignment:
| Q |
360 |
ttcaatgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttctt |
418 |
Q |
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|||| ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
14370676 |
ttcagtgactttcaattggcatgtttcgggactttctttctgcatgaaattgttttctt |
14370618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 15314608 - 15314688
Alignment:
| Q |
340 |
tgcactacttgatcacaaaattcaatgactttcagttggcatgtttggggagtttctttctgcatgaaagtgttttcttct |
420 |
Q |
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|||| ||||| |||||| | || | ||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
15314608 |
tgcagtacttaatcacacattttagtgattttcaattggcatgcttgggaagtttctttctacatgaaagtgttttcttct |
15314688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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