View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11896_low_9 (Length: 419)
Name: NF11896_low_9
Description: NF11896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11896_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 416
Target Start/End: Complemental strand, 19755713 - 19755320
Alignment:
| Q |
23 |
aattccgtcaatcattctcaagaaaatccagataatggtaacaatgtaattgatggagaagcaactgtgaagggccccataaagaaaaatcgagggcgta |
122 |
Q |
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| T |
19755713 |
aattccgtcaatcattctcaagaaaatctagataatggtaacaatgtaactgatggaaaagctgttgtgaagggccccataaagaaaaatcgagggcgta |
19755614 |
T |
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| Q |
123 |
aagaaggcaaacctgctagtgcacattcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaac |
222 |
Q |
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|| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755613 |
aacaaggcaaacctagtagtacacattcatgcgttggagataatgcgtcgaaggtatctctacttaactttgagaattcccttaattttctttaacaaac |
19755514 |
T |
|
| Q |
223 |
cttctttattaacttcgacttttttatgtgtttaagggtgctaaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagt |
322 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755513 |
cttctttattaacttcgactttttaatgtgtttcagggtgctgaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagt |
19755414 |
T |
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| Q |
323 |
caattgaccccatctttgaggacaatatgatagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgctctctgctcctcctca |
416 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
19755413 |
caattaaccccatctttgaggacaatatgataattgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctca |
19755320 |
T |
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