View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_13 (Length: 481)
Name: NF11897_high_13
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 6698690 - 6698226
Alignment:
| Q |
1 |
ttgatggcaaggcaaaagctcaagttcagactgagctttactgtggattgggatttttaacaatccaaacacttgggttcatgagactcacattttggga |
100 |
Q |
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| T |
6698690 |
ttgatggcaaggcaaaagctcaagttcagactgagctttactgtggattgggatttttaacaatccaaacacttgggttcatgagactcacattttggga |
6698591 |
T |
|
| Q |
101 |
gctaagttgggatgttatggaaccaatatgtttctttgttacttccctgcactttgcttttgcatacctattcttcataaggacttcaactgagccaaca |
200 |
Q |
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| T |
6698590 |
gctaagttgggatgttatggaaccagtatgtttctttgttacttccctgcactttgcttttgcatacctattcttcataaggacttcaactgagccaaca |
6698491 |
T |
|
| Q |
201 |
tttcaaggctatttccatcgtcgtttcatggctaaacaagagcgtcttatgaaggcatacaactttgatgcaaataggtataatgagctttgtaaagctt |
300 |
Q |
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| T |
6698490 |
tttcaaggctatttccatcgtcgtttcatgtctaaacaagagcgtcttatgaagacatacaactttgatgcaaataggtataatgagctttgcaaagctt |
6698391 |
T |
|
| Q |
301 |
gttatccaagtaatcatgttggtgttggtgcaaatgcaaaagctgaaacattttctccacctatccaccatgttgaagagacacttctaagggcataaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6698390 |
gttatccaagtaatcatgttggtgttggtgcaaatgcaaaagctgaaacattttctccacctatccgccatgttgaagagacacttctaagggcataaca |
6698291 |
T |
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| Q |
401 |
tcgttgaagaatcatatcttcatcaatgtttaattagtatttttagataatcgatgagccaaatg |
465 |
Q |
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| T |
6698290 |
tcgttgaagaatcatatcttcatcaatgtttaattagtatttttagataatcgatgagccaaatg |
6698226 |
T |
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