View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_high_20 (Length: 367)

Name: NF11897_high_20
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_high_20
NF11897_high_20
[»] chr8 (5 HSPs)
chr8 (65-357)||(114729-115021)
chr8 (1-88)||(106271-106358)
chr8 (65-202)||(178769-178906)
chr8 (12-96)||(143494-143578)
chr8 (226-285)||(15907689-15907749)
[»] chr4 (2 HSPs)
chr4 (74-202)||(37437612-37437740)
chr4 (251-322)||(49668568-49668638)
[»] chr2 (3 HSPs)
chr2 (257-328)||(8198656-8198727)
chr2 (257-328)||(8203416-8203487)
chr2 (245-285)||(4558697-4558738)
[»] chr1 (1 HSPs)
chr1 (260-339)||(26706352-26706432)
[»] chr7 (1 HSPs)
chr7 (259-328)||(18128528-18128598)
[»] chr6 (2 HSPs)
chr6 (303-340)||(16419660-16419697)
chr6 (303-340)||(33547811-33547848)
[»] chr5 (2 HSPs)
chr5 (303-340)||(13953520-13953557)
chr5 (257-340)||(38458803-38458885)
[»] chr3 (1 HSPs)
chr3 (296-340)||(9357887-9357931)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 65 - 357
Target Start/End: Complemental strand, 115021 - 114729
Alignment:
Q  65 gtttattttcgtgatccttggagaagcagttctaccataattgggatagctgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgt 164  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  115021 gtttattttcgtgatccttggagaagcagttctaccataatcgggatagttgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgt 114922  T
Q  165 tttagttatttgaaaattatatgtattgaataactttttcctaatgtgttagaatgaaggttaaattacacctgaagttccttaagtaatttattgtaat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114921 tttagttatttgaaaattatatgtattgaataactttttcctaatgtgttagaatgaaggttaaattacacctgaagttccttaagtaatttattgtaat 114822  T
Q  265 aaattggtctttaagtt-ttttcgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaagtccctcttaggtcctttg 357  Q
    ||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114821 aaattggtctttaagtttttttcataactattagat-catttaagttaattaattgtaataagtttgtcatttaagtccctcttaggtcctttg 114729  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 106358 - 106271
Alignment:
Q  1 ctcaaagaatttgaatgatcattactataactattggaagcattatatgggaatgctgagatcagtttattttcgtgatccttggaga 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106358 ctcaaagaatttgaatgatcattactataactattggaagcattatatgggaatgctgagatcagtttattttcgtgatccttggaga 106271  T

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Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 178769 - 178906
Alignment:
Q  65 gtttattttcgtgatccttggagaagcagttctaccataattgggatagctgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgt 164  Q
    |||||||| ||||||||||||||||||||||||||| || |||| ||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  178769 gtttatttccgtgatccttggagaagcagttctaccgtagttggaataactattctaatattcactatcttcaactttcgtcgagttgttgatctaatgt 178868  T
Q  165 tttagttatttgaaaattatatgtattgaataactttt 202  Q
    ||||||  | | | ||||||||||||||||| ||||||    
T  178869 tttagtcctcttataattatatgtattgaatcactttt 178906  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 143494 - 143578
Alignment:
Q  12 tgaatgatcattactataactattggaagcattatatgggaatgctgagatcagtttattttcgtgatccttggagaagcagttc 96  Q
    ||||||| |||||  ||||||  ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  143494 tgaatgaacattataataactggtggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttc 143578  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 15907689 - 15907749
Alignment:
Q  226 taaattacacctgaagttccttaagtaattta-ttgtaataaattggtctttaagtttttt 285  Q
    ||||||||||| ||| | | |||||| ||||| |||| |||||||||||||||||||||||    
T  15907689 taaattacaccagaaatcctttaagttatttacttgtgataaattggtctttaagtttttt 15907749  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 37437740 - 37437612
Alignment:
Q  74 cgtgatccttggagaagcagttctaccataattgggatagctgttctaatattcactatctttaactttcgtcgcgttgttggtctaatgttttagttat 173  Q
    |||| |||||||||  | |||| ||| ||| ||||||||  ||||||||||||||||||||| |||||||| ||||| |||| ||||   ||||||||||    
T  37437740 cgtgttccttggaggggtagttttactatagttgggataattgttctaatattcactatcttcaactttcgccgcgtcgttgatctagacttttagttat 37437641  T
Q  174 ttgaaaattatatgtattgaataactttt 202  Q
    | |||||||||||||||||||||||||||    
T  37437640 tagaaaattatatgtattgaataactttt 37437612  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 49668638 - 49668568
Alignment:
Q  251 taatttattgtaataaattggtctttaagttttttcgtaactattagatccttttaagttaattaattgtaa 322  Q
    ||||| ||||||||||||||||||||| ||||||  | | | ||||||| ||||||||||| ||||||||||    
T  49668638 taattaattgtaataaattggtctttatgtttttatgcaccaattagat-cttttaagttatttaattgtaa 49668568  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 8198727 - 8198656
Alignment:
Q  257 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 328  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8198727 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8198656  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 8203487 - 8203416
Alignment:
Q  257 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtt 328  Q
    ||||||| ||||||||||||||||||||| |||| |  |||| ||| |||||| |||||||||||||||||||    
T  8203487 attgtaacaaattggtctttaagttttttccgtaccacttaggtcc-tttaagataattaattgtaataagtt 8203416  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 4558697 - 4558738
Alignment:
Q  245 cttaagtaattta-ttgtaataaattggtctttaagtttttt 285  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  4558697 cttaagttatttaattgtaataaattggtctttaagtttttt 4558738  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 26706432 - 26706352
Alignment:
Q  260 gtaataaattggt-ctttaagttttttcgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaag 339  Q
    ||||||||||| | ||||||||||||||||| |  |||  |||||||||||||||||||| | | ||||||||| ||||||    
T  26706432 gtaataaattgattctttaagttttttcgtatcatttaagtccttttaagttaattaattattacaagtttgtcctttaag 26706352  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 18128598 - 18128528
Alignment:
Q  259 tgtaataaattggtc--tttaagttttttcgtaacta-ttagatccttttaagttaattaattgtaataagtt 328  Q
    |||||||||||||||  ||||||||||||||| |||| |||| | | ||||||||||||||||||||||||||    
T  18128598 tgtaataaattggtccttttaagttttttcgt-actacttaggttc-tttaagttaattaattgtaataagtt 18128528  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 16419660 - 16419697
Alignment:
Q  303 tttaagttaattaattgtaataagtttgtcatttaagt 340  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  16419660 tttaagttaattaattgtaacaagttggtcatttaagt 16419697  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 33547811 - 33547848
Alignment:
Q  303 tttaagttaattaattgtaataagtttgtcatttaagt 340  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  33547811 tttaagttaattaattgtaacaagtttgtcttttaagt 33547848  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 13953557 - 13953520
Alignment:
Q  303 tttaagttaattaattgtaataagtttgtcatttaagt 340  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  13953557 tttaagttaattaattgtaacaagtttgtcttttaagt 13953520  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 38458885 - 38458803
Alignment:
Q  257 attgtaataaattggtctttaagtttttt-cgtaactattagatccttttaagttaattaattgtaataagtttgtcatttaagt 340  Q
    ||||||||||||| || |||||||||||| |||| |  ||| ||| |||||||||| || ||||||||||||| |||||||||||    
T  38458885 attgtaataaattagt-tttaagtttttttcgtaccacttatatc-ttttaagttattttattgtaataagttagtcatttaagt 38458803  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 9357931 - 9357887
Alignment:
Q  296 agatccttttaagttaattaattgtaataagtttgtcatttaagt 340  Q
    |||||||||||||||| |||||| ||||||||| ||| |||||||    
T  9357931 agatccttttaagttatttaattataataagttggtcctttaagt 9357887  T

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