View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_23 (Length: 350)
Name: NF11897_high_23
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 38082941 - 38083290
Alignment:
| Q |
1 |
attggagtagctaaggtcacgataataaaaaataagctgttttgttatttctctattatatgtgtatcttttctttataaataaaggtttaggggagtgg |
100 |
Q |
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| T |
38082941 |
attggagtagctaaggtcacgataataaaaaataagctgttttgttatttctcttttatatgtgtatcttttctttataaataaaggtttaggggagtgg |
38083040 |
T |
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| Q |
101 |
ggtctagagctaaggggtaaaggcttcaaggctcaaagagcatttttagagagatagttacatattacatgccaacaaggtcttcttcaatcgggagcaa |
200 |
Q |
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| T |
38083041 |
ggtctagagctaaggggtaaaggcttcaaggctcaaagagcatttttagagagataattacatattacatgccaacaaggtcttcttcaatcgggagcaa |
38083140 |
T |
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| Q |
201 |
gaagatttccacatcttttttggatgagtatctgatgcagcattcatcaacccctagatattctatgtgtgtatttatttttacatgtttgtttactctt |
300 |
Q |
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| T |
38083141 |
gaagatttccacatcttttttggatgagtatctgatgcagcattcatcaacccctagatattctatgtgtgtatttatttttacatgtttgtttactttt |
38083240 |
T |
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| Q |
301 |
acttaaaacaatgatacttgaataaattactaaagtttggtgttaaactt |
350 |
Q |
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| T |
38083241 |
acttaaaacaatgatacttgaataaattactaaagtttggtgttaaactt |
38083290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 38087404 - 38087445
Alignment:
| Q |
35 |
agctgttttgttatttctctattatatgtgtatcttttcttt |
76 |
Q |
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| T |
38087404 |
agctgctttgttatttatcttttatatgtgtatcttttcttt |
38087445 |
T |
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