View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11897_high_36 (Length: 240)
Name: NF11897_high_36
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_36 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 115227 - 115005
Alignment:
| Q |
18 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115227 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
115128 |
T |
|
| Q |
118 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115127 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacatta |
115028 |
T |
|
| Q |
218 |
aggtgggtttattttcgtgatcc |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
115027 |
aggtgggtttattttcgtgatcc |
115005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 178563 - 178785
Alignment:
| Q |
18 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
117 |
Q |
| |
|
||||||| ||| |||| || | ||||| ||| |||||||||||| | | |||||||| ||||||||| |||||||||| || | |||||||||| || |
|
|
| T |
178563 |
ttattcaaaccaaagatgatgtagagtggcttgttgagaaagaaattgtggtgcacgaactgggaagcgacgaggaattgacgacacttgttaacagcct |
178662 |
T |
|
| Q |
118 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacatta |
217 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
178663 |
atgcaaacatgttgtgacaaattcatcatgttattaccaacttatagaagatcttaacgaacactacaacaatgaatggaaaaaggctatgggtacatta |
178762 |
T |
|
| Q |
218 |
aggtgggtttattttcgtgatcc |
240 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
178763 |
agatgggtttatttccgtgatcc |
178785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 607238 - 607440
Alignment:
| Q |
18 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
117 |
Q |
| |
|
||||| ||||| |||| || ||||||||| | ||||||||||| |||||||||| || || |||||| ||||||||||||| || ||||||| |||| | |
|
|
| T |
607238 |
ttattgacaccaaagatgatgcagagttgttggttgagaaagatatgattgtgcatgaactaggaagccacgaggaattaacgagtcttgttatcaattt |
607337 |
T |
|
| Q |
118 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaacactacaacagtgagtggaaaagggctatgggtacatta |
217 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||| |
|
|
| T |
607338 |
atccaaacatgttgtgacgaattcatcgtgttattaccaacttatggaagatcttaatgaacactacaacagtggatggagaaaggctatgggtccatta |
607437 |
T |
|
| Q |
218 |
agg |
220 |
Q |
| |
|
||| |
|
|
| T |
607438 |
agg |
607440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 9628 - 9466
Alignment:
| Q |
18 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
117 |
Q |
| |
|
||||||||||| |||| || ||||||||| | || ||||||||||||||||||||||| || ||||| |||||||||| | | ||||||||| ||| |
|
|
| T |
9628 |
ttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtct |
9529 |
T |
|
| Q |
118 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaaca |
180 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
9528 |
atgcaaacatattgtgatgaattcatcgtgttatttccaacttatggaggatcttgatgaaca |
9466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 23082 - 22920
Alignment:
| Q |
18 |
ttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagcaacgaggaattaacaagccttgttaacaatct |
117 |
Q |
| |
|
||||||||||| |||| || ||||||||| | || ||||||||||||||||||||||| || ||||| |||||||||| | | ||||||||| ||| |
|
|
| T |
23082 |
ttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtgcacgaactaggaagtgacgaggaattggcgaatcttgttaacggtct |
22983 |
T |
|
| Q |
118 |
atgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaaca |
180 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
22982 |
atgcaaacatattgtgatgaattcatcgtgttatttccaacttatggaggatcttgatgaaca |
22920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 37437885 - 37437783
Alignment:
| Q |
80 |
ggaagcaacgaggaattaacaagccttgttaacaatctatgcaaacatgttgtgacaaattcgtcgtgttattaccaacttatggaagatcttaatgaac |
179 |
Q |
| |
|
|||||| || ||||||| ||||| || | ||||||||||||||| |||||||| | ||||| |||||||| || |||||| |||||||| ||||||| | |
|
|
| T |
37437885 |
ggaagccacaaggaattgacaagtctcatcaacaatctatgcaaatatgttgtggcgaattcatcgtgttactatcaacttgtggaagattttaatgacc |
37437786 |
T |
|
| Q |
180 |
act |
182 |
Q |
| |
|
||| |
|
|
| T |
37437785 |
act |
37437783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University