View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_38 (Length: 229)
Name: NF11897_high_38
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_38 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 38082655 - 38082877
Alignment:
| Q |
7 |
gtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagacc |
106 |
Q |
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| T |
38082655 |
gtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagacc |
38082754 |
T |
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| Q |
107 |
ttgatattggtgtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaa |
206 |
Q |
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| T |
38082755 |
ttgatattggtgtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaa |
38082854 |
T |
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| Q |
207 |
tgtgatgaccaaagttgatcctc |
229 |
Q |
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||||| ||||||||||||||||| |
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| T |
38082855 |
tgtgaagaccaaagttgatcctc |
38082877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 38073573 - 38073795
Alignment:
| Q |
7 |
gtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagacc |
106 |
Q |
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|||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
38073573 |
gtggaaaagttgcacatcaattggattagaaaactttatagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaattatagagacc |
38073672 |
T |
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| Q |
107 |
ttgatattggtgtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaa |
206 |
Q |
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| T |
38073673 |
ttgatattggggtgaataacattaatggatacacaagctacaagcaagctagtatttggggtgttaagtacttcaagaacaacttcaaaagattggcaaa |
38073772 |
T |
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| Q |
207 |
tgtgatgaccaaagttgatcctc |
229 |
Q |
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|||| ||| ||||||||||||| |
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| T |
38073773 |
agtgaagacaaaagttgatcctc |
38073795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 38061197 - 38060993
Alignment:
| Q |
25 |
aattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagaccttgatattggtgtgaata |
124 |
Q |
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| T |
38061197 |
aattggattagaaaactgtatagttttatggaaccttttgtttcaaagtcaccaagagctgcatatatcaattatagagatcttgatattggggtgaata |
38061098 |
T |
|
| Q |
125 |
acattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaatgtgatgaccaaagttga |
224 |
Q |
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| T |
38061097 |
ataacaatggatacacaagctacaagcaagctagtatttggggtgttaagtacttcaagaacaacttcaaaagattggtaaaagtgaagaccaaagttga |
38060998 |
T |
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| Q |
225 |
tcctc |
229 |
Q |
| |
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||||| |
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| T |
38060997 |
tcctc |
38060993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 38087083 - 38087305
Alignment:
| Q |
7 |
gtggaaaaactgcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagacc |
106 |
Q |
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||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| ||||||| ||| || ||||| ||||||| |
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| T |
38087083 |
gtggaaacactgcacattaattggattagaaaactgtatagttatatggaaccttttgttacaaagtctccgagagctgcatatattaattacagagacc |
38087182 |
T |
|
| Q |
107 |
ttgatattggtgtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaa |
206 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||| ||||||||||| |||||||| || || |||| ||| |||||||| |
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| T |
38087183 |
ttgatattggtgtgaataacattaatgggtacacaagctataaggaagctagtatttggggtgttaagtacttcaaaaataacttcaaaaggttggcaaa |
38087282 |
T |
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| Q |
207 |
tgtgatgaccaaagttgatcctc |
229 |
Q |
| |
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|| | ||| ||||||||||||| |
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| T |
38087283 |
agttaagactaaagttgatcctc |
38087305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 37954921 - 37955132
Alignment:
| Q |
18 |
gcacattaattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagaccttgatattggt |
117 |
Q |
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|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||| ||||| |
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| T |
37954921 |
gcacataaattggattagaaaactttatatttatatggaaccttttgtttcaaagtctccaagaggtgcatatgtgaattatagagaccttgacattggg |
37955020 |
T |
|
| Q |
118 |
gtgaataacattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaatgtgatgacca |
217 |
Q |
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| T |
37955021 |
gtgaataataacaatggatacacaagctataagaaagctagcatatggggtgttaagtacttcaagaataacttcaaaagattggcaaaagtgaagacca |
37955120 |
T |
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| Q |
218 |
aagttgatcctc |
229 |
Q |
| |
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|||||||||||| |
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| T |
37955121 |
aagttgatcctc |
37955132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 38059257 - 38059461
Alignment:
| Q |
25 |
aattggattagaaaactttataattacatggaaccttttgtttcaaagtctccaagagctggatacatcaattatagagaccttgatattggtgtgaata |
124 |
Q |
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||||||||| ||||| | || | ||| |||||||||||||||||||||||||||||||||| ||| || || |||||||| ||||||||||| ||||||| |
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| T |
38059257 |
aattggattggaaaattgtacagttatatggaaccttttgtttcaaagtctccaagagctgcatatattaactatagagatcttgatattggggtgaata |
38059356 |
T |
|
| Q |
125 |
acattgatggatacacaagctacaagcaagctagtatctggggtgttaaatacttcaagaacaatttcagaagattggcaaatgtgatgaccaaagttga |
224 |
Q |
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| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||| ||||||| ||| |||| ||| |||||||| |
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| T |
38059357 |
atattaatggatacacaagctacaagcaagctagtgtttggggtgttaaatactttaagaacaacttcaaaagattgataaaagtgaagactaaagttga |
38059456 |
T |
|
| Q |
225 |
tcctc |
229 |
Q |
| |
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||||| |
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|
| T |
38059457 |
tcctc |
38059461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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