View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_40 (Length: 205)
Name: NF11897_high_40
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 18245713 - 18245905
Alignment:
| Q |
1 |
gctgcagccggaaacacctcaaacattatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgc |
100 |
Q |
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| T |
18245713 |
gctgcagccggaaacacctcaaacattatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgc |
18245812 |
T |
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| Q |
101 |
gtttagatttagccgcaggtggagttattccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg |
193 |
Q |
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| T |
18245813 |
gtttagatttagccgcaggtggagttattccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg |
18245905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 18252820 - 18253009
Alignment:
| Q |
4 |
gcagccggaaacacctcaaacattatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtt |
103 |
Q |
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| T |
18252820 |
gcagctggaaacaccacaaacattatcaaagccgctgttaccactgcaatagacgcacaatttcccggtgtaaacggtcttggaatttccattgctcgtt |
18252919 |
T |
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| Q |
104 |
tagatttagccgcaggtggagttattccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg |
193 |
Q |
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| T |
18252920 |
tagatatagccgttggtggtgttattccacttcacacacaccccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctg |
18253009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 18256748 - 18256559
Alignment:
| Q |
4 |
gcagccggaaacacctcaaacattatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtt |
103 |
Q |
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||||| ||||||||| |||||||||||||||| ||||| ||| ||||| | ||||| |||||| | ||| |||||||||||||||| ||| |||| |||| |
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| T |
18256748 |
gcagctggaaacaccacaaacattatcaaagccgctgttaccactgcaatagacgcacaatttcccggtgtaaacggtcttggaatatccattgcacgtt |
18256649 |
T |
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| Q |
104 |
tagatttagccgcaggtggagttattccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg |
193 |
Q |
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| T |
18256648 |
tagatatagccgtaggtggtgttattccacttcacacacaccccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctg |
18256559 |
T |
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