View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_5 (Length: 655)
Name: NF11897_high_5
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 13085346 - 13084841
Alignment:
| Q |
18 |
ggtgtgggatatgtggaaagggttggagccggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggtt |
117 |
Q |
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| T |
13085346 |
ggtgtgggatatgtggaaagggttggagccggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggtt |
13085247 |
T |
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| Q |
118 |
gggagtgggtcttgtcaggtaatttggtggtgttgtttcaggtgtttgtattcttaaaggcaaagaggcggtataggctaggtttccttttggtctagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13085246 |
gggagtgggtcttgtcaggtaatttggtggtgttgtttcaggtgtttgtattcttaaaggcaaagaggcggtataggctaggtttccttttggtctagca |
13085147 |
T |
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| Q |
218 |
ttcaactgtgtgatctatttggaaagtccgaaataatttac-nnnnnnnnnnnggaagacttgttgaggttgagcatctgctggatagaatccaatttca |
316 |
Q |
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| T |
13085146 |
tgcaactgtgtgatctatttggaaagtccgaaataatttacttttttttttttggaagacttgttgaggttgagcatctactcgatagaatccaatttca |
13085047 |
T |
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| Q |
317 |
ttaatggaagtggttctttgccatacaacattcacatcattacttactttataagtggaaggtggagctcgtccttgctgaaaccaattaggttctgtgt |
416 |
Q |
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| T |
13085046 |
ttaatggaagtggttctttgccatacaccattcacatcattgcttactttataagtggaaggtggagctcgtccttgttgaaaccaataaggttcggtgt |
13084947 |
T |
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| Q |
417 |
gttggccgaagatggatttgatttgtgctttgagagtttgggtggggcccaagttctttaggttgttctactaggtagggtgctcttagccctggtgtct |
516 |
Q |
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| T |
13084946 |
gttggtcggagatggatttgatttgtgttttgagagtttgggtggggcccaagttctttaggttgttctactaggtagggtgctcttagccttggtgtct |
13084847 |
T |
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| Q |
517 |
tcttgt |
522 |
Q |
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| T |
13084846 |
tcttgt |
13084841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 360 - 522
Target Start/End: Complemental strand, 13013847 - 13013685
Alignment:
| Q |
360 |
ttactttataagtggaaggtggagctcgtccttgctgaaaccaattaggttctgtgtgttggccgaagatggatttgatttgtgctttgagagtttgggt |
459 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
13013847 |
ttactttataagtggaaggtggagctcgtccttgttgaaaccaataaggttcggtgtgttggttggagatggatttgatttgtgctttgagagtttgggt |
13013748 |
T |
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| Q |
460 |
ggggcccaagttctttaggttgttctactaggtagggtgctcttagccctggtgtcttcttgt |
522 |
Q |
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| T |
13013747 |
ggggcccaagttctttaggttgttctactaggtagggtgctcttagccttggtgtcttcttgt |
13013685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 13013969 - 13013846
Alignment:
| Q |
18 |
ggtgtgggatatgtggaaagggttggagccggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcatgcggttaggtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13013969 |
ggtgtgggatatgtggaaagggttggagccggtggatctttatttgtgtcatgttgagttgtggcgagagtttggtacgatatttgcaggcggttaggtt |
13013870 |
T |
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| Q |
118 |
gggagtgggtcttgtcaggtaatt |
141 |
Q |
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|||||||||||||||||||||||| |
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| T |
13013869 |
gggagtgggtcttgtcaggtaatt |
13013846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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