View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_7 (Length: 624)
Name: NF11897_high_7
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 20 - 614
Target Start/End: Complemental strand, 48501976 - 48501382
Alignment:
| Q |
20 |
cgttcctcttctcttcatggcttcaaaatccttccatgttggcaatcacattatcattcattctctccttaaaactaaccccattaactcaatcctcttt |
119 |
Q |
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| T |
48501976 |
cgttcctcttctcttcatggcttcaaaatccttccatgttggcaatcacattatcattcattctctccttaaaactaaccccattaactcaatcctcttt |
48501877 |
T |
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| Q |
120 |
caatccatattccgttaacaacacaccatacaatatcaatatggatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgag |
219 |
Q |
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| T |
48501876 |
caatccatattccgttaacaacacaccatacaatatcaatatggatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgag |
48501777 |
T |
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| Q |
220 |
tttgactcaccaccaaagttcgaacttgctagagatggacaaaacgattcaactcgttctatttatctcaaagcagagcgaacttttgggtcagactcag |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48501776 |
tttgactcaccaccaaagttcgaacttgctagagatggacataacgattcaactcgttctatttatctcaaagcagagcgaacttctgggtcagactcag |
48501677 |
T |
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| Q |
320 |
aagccttagtaaccttcatggtattcttacaaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaa |
419 |
Q |
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| T |
48501676 |
aagccttagtaaccttcatggtattcttacaaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaa |
48501577 |
T |
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| Q |
420 |
ccctaatttcctcccactccttctccaactcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaa |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501576 |
ccctaatttcctcccactccttctccaactcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaa |
48501477 |
T |
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| Q |
520 |
ctcaaaccagagcccattgcatggatcatagactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcctttg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48501476 |
ctcaaaccagagcccattgcatggatcatagactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttg |
48501382 |
T |
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