View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_high_9 (Length: 532)
Name: NF11897_high_9
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 92 - 516
Target Start/End: Complemental strand, 15090058 - 15089636
Alignment:
| Q |
92 |
gatttcaactattcgtagtgagtacggttgaacttgagggaaatacgnnnnnnnng-gttcatctcacatattttacactcatgtgattgaaccatctct |
190 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
15090058 |
gatttcaactattcatagtgagtacggttgaacttgagggaaatacgttttttttttgttcatctcacatattttacactcatttgattgaatcatctct |
15089959 |
T |
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| Q |
191 |
caccttgtaccttatcatttcaactcttccacaaccaatcctagtccacaagcgtaggtctatgttcatttgacttctcctccgattgatacaactctac |
290 |
Q |
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| T |
15089958 |
caccttgtaccttat---ttcaactcttccacaaccaatcctagtccacaagcgtaggtctatgttcatttgacttctcctccgattgatacaactctac |
15089862 |
T |
|
| Q |
291 |
aatttatggttaaaaataaataataaaatgagattatagtctaaaaggacaatttcacacaacatattgaattgtggataaattcnnnnnnngtttgtag |
390 |
Q |
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| T |
15089861 |
aatttgtgcttaaaaataaaaaataaaatgagattatagtctaaaaggacaatttcacacaacatattgaattgtggataaattcaaaaaaagtttgtag |
15089762 |
T |
|
| Q |
391 |
gacaactaatttgcatcggaattttttatttcttttccatcaacactgctacttctcttcgttcatgcctcttcagtttcttttaaagtgatgctacagt |
490 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15089761 |
gacaactaatttgcatcggaattttttgtttcttttccatcaacactgctacttctcttcgttcatgcctcttcagtttcttttaaagtgatgctacagt |
15089662 |
T |
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| Q |
491 |
aaccactttcttttctttgaactagt |
516 |
Q |
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| T |
15089661 |
acccactttcttttctttgaactagt |
15089636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 15090155 - 15090088
Alignment:
| Q |
24 |
cccaccattaattaggggtggtacccagtaatgtcgtaattcatattttaactttacactttgagatt |
91 |
Q |
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|||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15090155 |
cccaccattaattacgagtggtacctggtaatgtcgtaattcatattttaactttacactttgagatt |
15090088 |
T |
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