View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_11 (Length: 527)
Name: NF11897_low_11
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 40093199 - 40093697
Alignment:
| Q |
13 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093199 |
tggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
40093298 |
T |
|
| Q |
113 |
atatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093299 |
atatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
40093398 |
T |
|
| Q |
213 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40093399 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgata |
40093498 |
T |
|
| Q |
313 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
412 |
Q |
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| T |
40093499 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
40093598 |
T |
|
| Q |
413 |
acaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctact |
511 |
Q |
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| T |
40093599 |
acaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctact |
40093697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 40062542 - 40063066
Alignment:
| Q |
13 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaa-----cat |
107 |
Q |
| |
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||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||| |
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| T |
40062542 |
tggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactatatctaagctaacat |
40062641 |
T |
|
| Q |
108 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
207 |
Q |
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||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |
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| T |
40062642 |
gaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaaca |
40062741 |
T |
|
| Q |
208 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact------------atttattagtcttac---------at |
286 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| || |
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| T |
40062742 |
ctcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgat |
40062841 |
T |
|
| Q |
287 |
agttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactacttt |
386 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || ||||||| |
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| T |
40062842 |
tgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctacttt |
40062941 |
T |
|
| Q |
387 |
ccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccac |
486 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
40062942 |
ccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccac |
40063041 |
T |
|
| Q |
487 |
tatatgaaaaatgttttttgctact |
511 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
40063042 |
tatatgaaaaatgttttttggtact |
40063066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 55 - 505
Target Start/End: Original strand, 40080933 - 40081410
Alignment:
| Q |
55 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
149 |
Q |
| |
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|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
150 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
249 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
250 |
ttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggagttaattcttttgatacaggttggcctaaaa |
327 |
Q |
| |
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|| | |||| ||||||| ||||||||||| |||| |||| |||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggagttaattttttcgatacagattggcctaaaa |
40081232 |
T |
|
| Q |
328 |
ggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaat |
427 |
Q |
| |
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|| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||||||| ||| || |
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| T |
40081233 |
ggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagttttat |
40081332 |
T |
|
| Q |
428 |
tttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgtttttt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
40081333 |
tttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaatgtttttt |
40081410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 40080866 - 40080912
Alignment:
| Q |
13 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcat |
59 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
40080866 |
tggacttcaggttcagcttttcttgtttttagtttctaaatatgcat |
40080912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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