View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_12 (Length: 519)
Name: NF11897_low_12
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 38567688 - 38567195
Alignment:
| Q |
7 |
gtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaagg |
106 |
Q |
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| T |
38567688 |
gtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaagg |
38567589 |
T |
|
| Q |
107 |
ttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctgggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaagga |
206 |
Q |
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| T |
38567588 |
ttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaagga |
38567489 |
T |
|
| Q |
207 |
tataatggaggcacagtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacccccatgctaagtcaatttg |
306 |
Q |
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| T |
38567488 |
tataatggaggcacggtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacctccatgctaagtcaatttg |
38567389 |
T |
|
| Q |
307 |
aaagttccttaattacattaattcttgtttcttcatatggatatgtannnnnnnaggtctcttggccaggcatcatctggtttgagtgcttttgcggcag |
406 |
Q |
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| T |
38567388 |
aaagttccttaattacattaattctcgtttcttcatatggatatgtatttttttaggtctcttggccaggcatcatctggtttgagtgcttttgcggcag |
38567289 |
T |
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| Q |
407 |
gtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattca |
500 |
Q |
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| T |
38567288 |
gtcgggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattca |
38567195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 38526560 - 38526070
Alignment:
| Q |
7 |
gtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaagg |
106 |
Q |
| |
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|||| |||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
38526560 |
gtgtatattttcaggttgcatcctttactggggaaaagcaagcagtatctagttatagcaaatttcttgtagatgcttacaaatcaggagtttttgaagg |
38526461 |
T |
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| Q |
107 |
ttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctgggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaagga |
206 |
Q |
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| |||| |||||| ||| |||||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
38526460 |
tactatagctggagcaggactaggcacagttatgtttgttattttctgtggttatgctttggcagtatggtttggtgcaaagatgatcattgaaaaagga |
38526361 |
T |
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| Q |
207 |
tataatggaggcacagtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacccccatgctaagtcaatttg |
306 |
Q |
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|||||||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||| | || ||| || | |||| |
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| T |
38526360 |
tataatggtggcaccgtgattaatgtgattatcgccgtgttaacagcttccatgtaagt--aaccatcatttttatgaatatccttgccaataaagtttg |
38526263 |
T |
|
| Q |
307 |
aaagttccttaattacattaattcttgtttcttcatatggatatgtannnnnnnaggtctcttggccaggcatcatctggtttgagtgcttttgcggcag |
406 |
Q |
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||||||||||| ||| ||||| | | | || ||||||||||| ||||||||||||||||||||| | || |||||||||||||||| | |
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| T |
38526262 |
aaagttccttatttagattaaaaaatatat-atcttatggatatgtgtatttttaggtctcttggccaggcatcaccaagtatgagtgcttttgcggcgg |
38526164 |
T |
|
| Q |
407 |
gtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526163 |
gtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattca |
38526070 |
T |
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