View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_13 (Length: 488)
Name: NF11897_low_13
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 46952460 - 46952904
Alignment:
| Q |
6 |
gacaagtaaaagcatgtcaaaaaataggcaaattgtatatcttagcaatgaaataaaattgtttaactgattatactttcataagaaattttcgtcgcga |
105 |
Q |
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| T |
46952460 |
gacaagtaaaagaatgtcaaaaagtaggcaaattttatatcttagcaatgaaataaaattgtttaactgattatactttcataagaaattttcgtcgcga |
46952559 |
T |
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| Q |
106 |
caacaaacattcaataccaaagttttctatgctgtaatattatttattatatacaagaacactcatggtgattgagaatatacatgtcactatcacttgt |
205 |
Q |
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| T |
46952560 |
caacaaacattcaataccaaagttttctatgctataatattatt----atatacaagaacactcatggtgattgagaatatacatgtcactatca----- |
46952650 |
T |
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| Q |
206 |
tattaattaatcactacattgagatcatttgttgaatttgctgctgctgattatgaatattgcagttgaaacgcgagcatgaccaaattgtactgttctc |
305 |
Q |
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| T |
46952651 |
-------------ctacattgagatcatttgttgaatttgctgctgctgattttgaatattgcagttgaagcgcgagcatgaccaaattgtactgttctc |
46952737 |
T |
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| Q |
306 |
tgataaaggtacaattggaatattgtcacaattgcagatttcaatcatggtgccatctggatcatggaagaacaactgatcaacgtagattccattttcc |
405 |
Q |
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| T |
46952738 |
tgataaaggtacaattggaatattgtcacaattgcagatttcaatcatggtgccatctggatcatggaagaacaactgatcaacgtagattccattttcc |
46952837 |
T |
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| Q |
406 |
tctactaagttcttcacatactctatcttcatttgctgcagtttattctccactgctgccatacttt |
472 |
Q |
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| T |
46952838 |
tctactaagttcttcacatactctatcttcatttgctgcagtttattctccactgctgccatacttt |
46952904 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 51846039 - 51845963
Alignment:
| Q |
331 |
tcacaattgcagatttcaatcatggtgccatctggatcatggaagaacaactgatcaacgtagattccattttcctc |
407 |
Q |
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| T |
51846039 |
tcacaattgcatatctcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctc |
51845963 |
T |
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