View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_17 (Length: 420)
Name: NF11897_low_17
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 32550966 - 32550558
Alignment:
| Q |
20 |
gtgggcaggctcttcaacttgcacatgctcacctgacctcccagcatgtgcttgcttaaattgggccaattgctcctcatatt----------------- |
102 |
Q |
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| T |
32550966 |
gtgggcaggctcttcaacttgcacatgctcacctgaccttccagcatgtgcttgcttaaattgggccaattgctcctcatattatatatatatatgaccg |
32550867 |
T |
|
| Q |
103 |
--ttcgttcaagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgg |
200 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550866 |
ttttcgttcaagcaatttttgcataagggcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgg |
32550767 |
T |
|
| Q |
201 |
gtcatctcaggctggtgtgaggacccctcaccatgattcagggtgagcttgagggatgtgcaattcccttctggtagttgacagctaagttaccagctcc |
300 |
Q |
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| T |
32550766 |
gtcatctcaggctggtgtgaggatccctcaccatgattcagggtgagcttgagggatgtgcaattcccttctggtggttgacagctaagttaccagctcc |
32550667 |
T |
|
| Q |
301 |
atataacttccctttagatttatcgccggcaacattggtccaagttcggagggtcaaaccatgatcaactgatgctccttggaaaagagcctctcaacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32550666 |
atataacttccctttagatttatcgccggcaacattagtccaagtttggagggtcaaaccatgatcaactgatgctccttggaaaagagcctctcaacaa |
32550567 |
T |
|
| Q |
401 |
gcttcctat |
409 |
Q |
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||||||||| |
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| T |
32550566 |
gcttcctat |
32550558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 368
Target Start/End: Original strand, 40542707 - 40543015
Alignment:
| Q |
67 |
gtgcttgcttaaattgggccaattgctcctcatattttcgttc------aagcaatttttgcacaagagcctcctgactcgccatttgttgtatgagctg |
160 |
Q |
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|||||||| |||| || | || |||||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
40542707 |
gtgcttgcctaaactgagtcagttgctcctcatattttcgttgtcggctaagcaaatcttgcacaacggcctcgtgactcgccatttgttgtgtgagctg |
40542806 |
T |
|
| Q |
161 |
ctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggtgagcttgagggatg-t |
259 |
Q |
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|||||| |||||| ||||||| || || | ||||||| ||||| ||||||| || |||| || ||||||||||| ||||| || |||| | || | |
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| T |
40542807 |
ctcttgagtcaatctttgaataaggtcacacatttcagaggtcagtgcaggctgttggaaggatccttcaccatgattaagggtaagtctgagagttgct |
40542906 |
T |
|
| Q |
260 |
gcaattcccttctggtagttgacagctaagttaccagctccatataacttccctttagatttatcgccggcaacattggtccaagttcggagggtcaaac |
359 |
Q |
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|||| |||||| || |||| || | |||||||| || ||||||| || ||||| | ||||||||| |||| |||||||||||| ||||| ||||| |
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| T |
40542907 |
gcaacacccttccggcagttagcaaccaagttaccggcaccatatagatttcctttggttttatcgccaacaactttggtccaagtttagagggccaaac |
40543006 |
T |
|
| Q |
360 |
catgatcaa |
368 |
Q |
| |
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|||||||| |
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| T |
40543007 |
tatgatcaa |
40543015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 369
Target Start/End: Original strand, 6659817 - 6660129
Alignment:
| Q |
64 |
catgtgcttgcttaaattgggccaattgctcctcatattttcgttc------aagcaatttttgcacaagagcctcctgactcgccatttgttgtatgag |
157 |
Q |
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||||||||||| |||||| |||||||||||||||||| |||||| |||||| | ||| |||| ||||| || ||||||||||| || |||| |
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| T |
6659817 |
catgtgcttgccgaaattgagccaattgctcctcatatgttcgttggcggctaagcaaatcttgtacaacggcctcatgtctcgccatttgctgggtgag |
6659916 |
T |
|
| Q |
158 |
ctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggtgagcttgagggat |
257 |
Q |
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||||||||| |||||| ||||||| || || ||||| ||| |||||| ||||||| || ||||| || || |||||||| ||||| | |||||| | |
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| T |
6659917 |
ctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagtgcaggctgctgggaggatccttcgccatgattaagggtaaatctgagggtt |
6660016 |
T |
|
| Q |
258 |
g-tgcaattcccttctggtagttgacagctaagttaccagctccatataacttccctttagatttatcgccggcaacattggtccaagttcggagggtca |
356 |
Q |
| |
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| ||||| |||||| ||||||| | || |||||||| || |||||||| || ||||| | ||||||||| ||||| ||||||||| || |||||| || |
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| T |
6660017 |
gttgcaacacccttccggtagttagcggccaagttaccggcaccatataattttcctttggttttatcgccagcaactttggtccaaatttggagggcca |
6660116 |
T |
|
| Q |
357 |
aaccatgatcaac |
369 |
Q |
| |
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||| ||||||||| |
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| T |
6660117 |
aactatgatcaac |
6660129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 369
Target Start/End: Original strand, 7781711 - 7781952
Alignment:
| Q |
129 |
gcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccct |
228 |
Q |
| |
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||||| || ||||||||||| || ||||||||||||| |||||| ||||||| || || ||||| ||| |||||| | ||||||| || ||||| || | |
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| T |
7781711 |
gcctcgtgtctcgccatttgctgggtgagctgctcttgagtcaatctttgaataaggtcacgcatctcaggggtcagcgcaggctgctgggaggatcctt |
7781810 |
T |
|
| Q |
229 |
caccatgattcagggtgagcttgagggatg-tgcaattcccttctggtagttgacagctaagttaccagctccatataacttccctttagatttatcgcc |
327 |
Q |
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|||||||||| ||||| | |||||| || ||||| |||||| ||||||| | || |||||||| || |||||||| || ||||| | ||||||||| |
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| T |
7781811 |
caccatgattaagggtaaatctgagggttgttgcaacacccttcaggtagttagcggccaagttaccggcaccatataattttcctttggttttatcgcc |
7781910 |
T |
|
| Q |
328 |
ggcaacattggtccaagttcggagggtcaaaccatgatcaac |
369 |
Q |
| |
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||||| |||||||| | | |||||| ||||| ||||||||| |
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| T |
7781911 |
agcaactttggtccatggttggagggccaaactatgatcaac |
7781952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 7430451 - 7430576
Alignment:
| Q |
119 |
ttgcacaagagcctcctgactcgccatttgttgtatgagctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgt |
218 |
Q |
| |
|
||||||||| ||| | ||||||||||| || || ||| |||||||||||||||| | ||||| ||||| ||||| || | |||| ||||||||| || |
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| T |
7430451 |
ttgcacaagggccgcttgactcgccatctgctgcgtgaactgctcttgtgtcaatctatgaataagctcccgcatctctggcgtcagctcaggctgctgg |
7430550 |
T |
|
| Q |
219 |
gaggacccctcaccatgattcagggt |
244 |
Q |
| |
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|||| || ||||||||||| ||||| |
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| T |
7430551 |
gaggttccttcaccatgattgagggt |
7430576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 6052593 - 6052679
Alignment:
| Q |
158 |
ctgctcttgtgtcaatttttgaatcagctcgcgcatttcatgggtcatctcaggctggtgtgaggacccctcaccatgattcagggt |
244 |
Q |
| |
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|||||||||||||||| | ||||| ||||| ||||| || |||||| ||||||||| || ||| | || ||||||||||| ||||| |
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| T |
6052593 |
ctgctcttgtgtcaatctatgaataagctcccgcatctctggggtcagctcaggctgctgggagaatccttcaccatgattgagggt |
6052679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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