View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_low_18 (Length: 407)

Name: NF11897_low_18
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_low_18
NF11897_low_18
[»] chr3 (5 HSPs)
chr3 (6-391)||(2657718-2658102)
chr3 (195-323)||(2637909-2638037)
chr3 (335-384)||(1897069-1897118)
chr3 (335-384)||(1906515-1906564)
chr3 (336-384)||(2932560-2932608)
[»] scaffold0097 (1 HSPs)
scaffold0097 (6-362)||(36136-36495)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 391
Target Start/End: Original strand, 2657718 - 2658102
Alignment:
Q  6 tcaaaagattatcatataactgcaatcctacatgaaataataaagtccagagtcaaataaggcataatagttaataattttatctgtaacgagtaattac 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657718 tcaaaagattatcatataactgcaatcctacatgaaataataaaatccagagtcaaataaggcataatagttaataattttatctgtaacgagtaattac 2657817  T
Q  106 caacacaaccttattcaatttattactactataatcagccaatacatcagattcttgtatcaatacatattccagtagtcactactaataggatataaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657818 caacacaaccttattcaatttattactactataatcagccaatacatcagattcttgtatcaatacatattccagtagtcactactaataggatataaat 2657917  T
Q  206 aatgtacatnnnnnnnnnggctttgaagtcaaactcataaactgagtgctcatctttatcttttactttagttctatattcacattctgcagtgcacaag 305  Q
    |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2657918 aatgtacat-aaaaaaatggctttgaagtcaaactcataaactgagtgctcatctttatcttttactttagttctatattcacattctgcagtgcacagg 2658016  T
Q  306 atgtagaccgagacttatgttttgcacggtttagcataagttttcccttccaataaggataaccgaaacagtaagaaaattaaaac 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658017 atgtagaccgagacttatgttttgcacggtttagcataagttttcccttccaataaggataaccgaaacagtaagaaaattaaaac 2658102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 2638037 - 2637909
Alignment:
Q  195 aggatataaataatgtacatnnnnnnnnnggctttgaagtcaaactcataaactgagtgctcatctttatcttttactttagttctatattcacattctg 294  Q
    ||||||||||||||||||||         |||||||||||| ||||| || ||| |||||||||||||||||||  || || ||||||||||||||||||    
T  2638037 aggatataaataatgtacatccaaaaaatggctttgaagtcgaactcgtacactaagtgctcatctttatctttccctgtaattctatattcacattctg 2637938  T
Q  295 cagtgcacaagatgtagaccgagacttat 323  Q
    || ||||||||||||||||| ||||||||    
T  2637937 cactgcacaagatgtagaccaagacttat 2637909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 1897069 - 1897118
Alignment:
Q  335 tttagcataagttttcccttccaataaggataaccgaaacagtaagaaaa 384  Q
    ||||||| ||||||||||||||| |||||||||| |||| ||||||||||    
T  1897069 tttagcagaagttttcccttccattaaggataacagaaaaagtaagaaaa 1897118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 1906515 - 1906564
Alignment:
Q  335 tttagcataagttttcccttccaataaggataaccgaaacagtaagaaaa 384  Q
    ||||||| ||||||||||||||| |||||||||| |||| ||||||||||    
T  1906515 tttagcagaagttttcccttccattaaggataacagaaaaagtaagaaaa 1906564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 2932608 - 2932560
Alignment:
Q  336 ttagcataagttttcccttccaataaggataaccgaaacagtaagaaaa 384  Q
    |||||| ||||||||||||||| |||||||| | |||| ||||||||||    
T  2932608 ttagcagaagttttcccttccattaaggataccagaaaaagtaagaaaa 2932560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 36495 - 36136
Alignment:
Q  6 tcaaaagattatcatataactgcaatcctacatgaaataataaagtccagagtcaaataaggcataatagttaataattttatctgtaacgagtaattac 105  Q
    ||||||||| |||||||||| ||||||  ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  36495 tcaaaagatcatcatataaccgcaatctaacatgaaataatataatccagagtcaaataaggcataatagttaacaattttatctgtaacgagtaatgac 36396  T
Q  106 caacacaaccttattcaatttattactac----tataatcagccaatacatcagattcttgtatcaatacatattccagtagtcactactaataggatat 201  Q
    ||||||||| | |||||| | ||||||||    |||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||    
T  36395 caacacaacttaattcaaatcattactacactatataatcagccaatacatcagattcttccatcaatacatattccagtagtcactagtaataggatat 36296  T
Q  202 aaataatgtacatnnnnnnnnnggctttgaagtcaaactcataaactgagtgctcatctttatcttttactttagttctatattcacattctgcagtgca 301  Q
    |||||||||||||         |||| ||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  36295 aaataatgtacatccaaaaaatggctatgaagtcaaactcgtaaactaagtgctcgtctttatctttcactttagttctatattcacattctgcagtgca 36196  T
Q  302 caagatgtagaccgagacttatgttttgcacggtttagcataagttttcccttccaataag 362  Q
    ||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||| ||||    
T  36195 caagatgtagaccgagacttatgtcctgcacggtttggcataag-tttcccttccattaag 36136  T

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