View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11897_low_19 (Length: 389)
Name: NF11897_low_19
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 38567729 - 38568098
Alignment:
| Q |
19 |
ctgccacacataagcagcaagaaaataaaaagtaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaattt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567729 |
ctgccacacataagcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaattt |
38567828 |
T |
|
| Q |
119 |
gatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaaattattgttcaacacacttttgcatgaattttacgttcaatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38567829 |
gatatgtttggatgttatcaaatatagttgattttgacccacttttaaacctcaaatttattgttcaacacacttttgcatgaattttacgttcaacttt |
38567928 |
T |
|
| Q |
219 |
tagccacagtcaatttttgttactgtagaaccaaactcacactta---------gaagtttgcaaatttacttctgacaacataccgttcttattgagcc |
309 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567929 |
tagccacagtcaatttttgttactgcagaaccaaactcacacttagaagttattgaagtttgcaaatttacttctgacaacataccgttcttattgagcc |
38568028 |
T |
|
| Q |
310 |
aattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatg |
379 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568029 |
aattgtctgttcaacaacatgcgcagcttttgcataagcagtttgacctttagaagccatcctgcctatg |
38568098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 281 - 379
Target Start/End: Original strand, 38526859 - 38526957
Alignment:
| Q |
281 |
ttctgacaacataccgttcttattgagccaattgtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccatcctgcctatg |
379 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38526859 |
ttctaacagcataccgttcttattgagccaatggtctgttcaacaacatgtgcagcttttgcataagcagtttgacctttagaagccattctgcctatg |
38526957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 10860016 - 10859936
Alignment:
| Q |
53 |
acatgtatgtttcgttccactactggactgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgtt |
134 |
Q |
| |
|
|||||||||||| |||||||| |||| ||||||||||| ||| |||| |||||||||||| ||||| |||||| ||||| |
|
|
| T |
10860016 |
acatgtatgtttggttccacttttggaa-gaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgtt |
10859936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 7262988 - 7263060
Alignment:
| Q |
81 |
tgaggcaaaattaattttagaagtgtagaaatgaatttgatatgtttggatgttatcaaatatagttgatttt |
153 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||| ||||| || || ||||||| || | |||| |||||||| |
|
|
| T |
7262988 |
tgaggcaaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt |
7263060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University