View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_2 (Length: 828)
Name: NF11897_low_2
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_2 |
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| [»] scaffold1460 (1 HSPs) |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 20 - 809
Target Start/End: Original strand, 21700152 - 21700936
Alignment:
| Q |
20 |
catataaaactctgaatttttgagggagcctttagtttccaggtaccatcccaattgcccggacactactaattataattcctccatgcacaacctgtaa |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||| |
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| T |
21700152 |
catataaaactctgaatttttgggggagcctttagtttccaggtaccatcccaatagcccggacactattaat------tcctccatgcacaacctataa |
21700245 |
T |
|
| Q |
120 |
gcactcttcaccaaatagagaccatttttctctcctttccaaactaagaggtcctccgggacttgaggaaccaatggagtttggagaatatctttaccct |
219 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21700246 |
gcactattcaccaaatagagaccatttctctctcctttccaaattaagcggtcctccgggacttgaggaaccaatggagtttggagaatatctttagcct |
21700345 |
T |
|
| Q |
220 |
gatcgacattgaaaatacgaagaattagatatgtattccattgtttgtttcccgtgtccattaaacgacgcactatgtagttatgtaaaaaatagttttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21700346 |
gatcgacattgaaaatacgaagaattagatatgtattccattgtttgtttcctgtgtccattaaactacgcactatgtagttatgtaaaaaatagttttc |
21700445 |
T |
|
| Q |
320 |
atgcaaattaccatcaatacacttaccaccttgcagccatggttcgttaagaattggaatagattcacctgtgcccatgaaccaacacgcaccacctctg |
419 |
Q |
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| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21700446 |
aggaaaattaccatcaatacccttaccaccttgcagccatggttcgttaagaattggaatagattcacctgtgcccacgaaccaacacgcaccacctcta |
21700545 |
T |
|
| Q |
420 |
acgataaaccgagcccggagaatactacgccaaacattgctggggttgtgacccacacgtgcattaagataagtactggaagggaagtatcgtgctttga |
519 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
21700546 |
acgataaaccaagcccggagaatactacgccaaacattgctggggttgtgacccacacgtgcatttagataagtactgcaagggaagtatcgtgctttga |
21700645 |
T |
|
| Q |
520 |
atatgcgagagaccaatgacgttgtgtcagtttgtagtttccatcactgttttccgagcatagcaagattgaacaccgataggtctttaaaacccat-cc |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || |
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| T |
21700646 |
atatgcgagagaccaatgacgttgtgtcagtttgtagtttccatcactgttttccaagcatagcaagattgaacgccgataggtctttaaaacccatccc |
21700745 |
T |
|
| Q |
619 |
tccatgagttttgtacatagacaacttctcccaagacaaccaatgaataccacaattattctcccctccatgaccccaccaaaaagcattcatcattatt |
718 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21700746 |
tccatgagttttgtgcatagacaacttctcccaagacaaccaatgaataccacgattattctcccctccatgaccccaccaaaaagcattcatcattatt |
21700845 |
T |
|
| Q |
719 |
tctatattagtaataagtgtggttggaagttgaaataaactcataacatacgttggtattgcctgcaaaaccgacttaatcatcacttctt |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21700846 |
tctatattagtaataagtgtggttggaagttgaaataaaatcataacatacgttggtattgcctgcaaaaccgacttaatcatcacttctt |
21700936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 566 - 732
Target Start/End: Complemental strand, 41342741 - 41342574
Alignment:
| Q |
566 |
ctgttttccgagcatagcaagattgaacaccgataggtctttaaaacccat-cctccatgagttttgtacatagacaacttctcccaagacaaccaatga |
664 |
Q |
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|||||| || |||||||| ||||||||| | | |||||||| || ||||| ||||||| || |||| ||| || | |||||||||||| ||||||||| |
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| T |
41342741 |
ctgtttaccaagcatagccagattgaacgctgtaaggtctttgaagcccatacctccatttgtcttgtgcatcgagagcttctcccaagataaccaatga |
41342642 |
T |
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| Q |
665 |
ataccacaattattctcccctccatgaccccaccaaaaagcattcatcattatttctatattagtaat |
732 |
Q |
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|| || | |||||| ||| |||||||||||||||||||| ||||||||| | || ||| ||||||| |
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| T |
41342641 |
atgcctcgattattagacccaccatgaccccaccaaaaagcgttcatcattttctcaatagtagtaat |
41342574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 723
Target Start/End: Original strand, 25750237 - 25750274
Alignment:
| Q |
686 |
ccatgaccccaccaaaaagcattcatcattatttctat |
723 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
25750237 |
ccatgaccccaccaaaaagcattcatcattttttctat |
25750274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 600 - 714
Target Start/End: Complemental strand, 45636556 - 45636441
Alignment:
| Q |
600 |
aggtctttaaaacccat-cctccatgagttttgtacatagacaacttctcccaagacaaccaatgaataccacaattattctcccctccatgaccccacc |
698 |
Q |
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|||||||| |||||||| ||||||| || |||| ||| || | |||||||||||| ||||| ||||| || | |||||| ||| || |||||||||| |
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| T |
45636556 |
aggtctttgaaacccatacctccatttgtcttgtgcatcgagagcttctcccaagataaccagtgaatgcctcgattattagacccaccgtgaccccacc |
45636457 |
T |
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| Q |
699 |
aaaaagcattcatcat |
714 |
Q |
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|||||||||||||||| |
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| T |
45636456 |
aaaaagcattcatcat |
45636441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1460 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1460
Description:
Target: scaffold1460; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 723
Target Start/End: Original strand, 742 - 779
Alignment:
| Q |
686 |
ccatgaccccaccaaaaagcattcatcattatttctat |
723 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
742 |
ccatgaccccaccaaaaagcattcatcattttttctat |
779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 10139953 - 10139912
Alignment:
| Q |
98 |
ttcctccatgcacaacctgtaagcactcttcaccaaatagag |
139 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
10139953 |
ttcctccatacacaacctataagcactcttcaccaaatagag |
10139912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 10140942 - 10140983
Alignment:
| Q |
98 |
ttcctccatgcacaacctgtaagcactcttcaccaaatagag |
139 |
Q |
| |
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||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
10140942 |
ttcctccatacccaacctataagcactcttcaccaaatagag |
10140983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 723
Target Start/End: Complemental strand, 34933676 - 34933636
Alignment:
| Q |
683 |
cctccatgaccccaccaaaaagcattcatcattatttctat |
723 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
34933676 |
cctccatgaccccaccagaaagcattcatcattttttctat |
34933636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 600 - 669
Target Start/End: Original strand, 13761608 - 13761678
Alignment:
| Q |
600 |
aggtctttaaaacccatc-ctccatgagttttgtacatagacaacttctcccaagacaaccaatgaatacc |
669 |
Q |
| |
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||||| ||||||||||| | ||||| ||||| | ||||||||||||||||||||| | |||||||||||| |
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| T |
13761608 |
aggtccttaaaacccatgacaccatgcgttttatgcatagacaacttctcccaagatagccaatgaatacc |
13761678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0114 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 723
Target Start/End: Original strand, 13073 - 13110
Alignment:
| Q |
686 |
ccatgaccccaccaaaaagcattcatcattatttctat |
723 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||| |
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| T |
13073 |
ccatgaccccaccaaaaagcgttcatcattttttctat |
13110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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