View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_20 (Length: 368)
Name: NF11897_low_20
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_20 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 110689 - 110337
Alignment:
| Q |
1 |
gaataattcaaaacttacaatgatttccatcgcatcttgctttatcaattgaacacaggatttcatttcaacaaatatcacgatcaaaattaaattctct |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
110689 |
gaataattcaaaacttacaaagatttccatcgcatcttgctttatcaattgaacacaggatttcatttcaacaaatatcacggtcaaaattaaattctct |
110590 |
T |
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| Q |
101 |
gcaatttcaccggttaacacaaactgtgatcttctctttaacacgcttaatttcagccattttattatacgttcctccattcgcagatagcaacttgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
110589 |
gcaatttcaccggttaacacaaactgtgatcttctctttaacacgcttaatttcagccaatttattatacgttcctccattcacagatagcaacttgatg |
110490 |
T |
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| Q |
201 |
gaaaccctagcatcggcagcgattaaacaattaataaaatcctcaagattgttgttaacttattgacatgtgaattatctcaaaataaaaatcagcataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110489 |
gaaaccctagcatcggcagcgattaaacaattaataaaatcctcaagattgttgttaacttattgacatgtgaattatctcaaaataaaaatcagcataa |
110390 |
T |
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| Q |
301 |
acatataaccattaaaatcaataagcaaaagagagagatcattagacttatct |
353 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
110389 |
acatataagcattaaaatcaataagcaaaagaaagagatcgttagacttatct |
110337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 16366212 - 16366329
Alignment:
| Q |
235 |
taaaatcctcaagattgttgttaacttattgacatgtgaattatctcaaaataaaaatcagcataaacatataaccattaaaatcaataagcaaaagaga |
334 |
Q |
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| T |
16366212 |
taaaatcctcaagattgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaa-aga |
16366310 |
T |
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| Q |
335 |
gagatcattagacttatct |
353 |
Q |
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| T |
16366311 |
gagatcattagacttatct |
16366329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 21189710 - 21189619
Alignment:
| Q |
260 |
ttattgacatgtgaattatctcaaaataaaaatcagcataaacatataaccattaaaatcaataagcaaaagagagagatcattagacttatct |
353 |
Q |
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| T |
21189710 |
ttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaaga--gagatcattagacttatct |
21189619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 2590800 - 2590715
Alignment:
| Q |
275 |
ttatctcaaaataaaaatcagcataaacatataaccatt------aaaatcaataagcaaaagagagagatcattagacttatctg |
354 |
Q |
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||||||| |||||| ||| ||||||||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||| |
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| T |
2590800 |
ttatctctaaataataatgagcataaacatataagcatttaaaaaaaaaacaataaacaaaagagagagatcattagacttatctg |
2590715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 9111353 - 9111442
Alignment:
| Q |
262 |
attgacatgtgaattatctcaaaataaaaatcagcataaacatataaccattaaaatcaataagcaaaagagagagatcattagacttatct |
353 |
Q |
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| T |
9111353 |
attgacatgtgaattatctcaaaataacaataagtataaacatataaacattaaaatcaataagcaaa--agagagatcattagacttatct |
9111442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 353
Target Start/End: Original strand, 21185101 - 21185221
Alignment:
| Q |
232 |
taataaaatcctcaagattgttgttaacttattgacatgtgaattatctcaaaataaaaatcagcataaacatataaccattaa-aatcaataagcaaaa |
330 |
Q |
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|||||||||||||||||||||||| || || | ||| |||||| |||| |||||| ||||||||||||||||||| |||||| || |||||||||||| |
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| T |
21185101 |
taataaaatcctcaagattgttgtaaaagtagt--catatgaattctctctaaataataatcagcataaacatataagcattaataaacaataagcaaaa |
21185198 |
T |
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| Q |
331 |
gagagagatcattagacttatct |
353 |
Q |
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| T |
21185199 |
tagagagatcattagacttatct |
21185221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 21184455 - 21184499
Alignment:
| Q |
271 |
tgaattatctcaaaataaaaatcagcataaacatataaccattaa |
315 |
Q |
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| T |
21184455 |
tgaattatctctaaataataatcagcataaacatataagcattaa |
21184499 |
T |
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