View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_low_22 (Length: 353)

Name: NF11897_low_22
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_low_22
NF11897_low_22
[»] chr3 (3 HSPs)
chr3 (78-282)||(29134422-29134630)
chr3 (60-282)||(9460581-9460808)
chr3 (66-122)||(43808780-43808836)
[»] chr6 (3 HSPs)
chr6 (67-254)||(18332409-18332595)
chr6 (75-173)||(21544814-21544912)
chr6 (66-134)||(34704055-34704123)
[»] chr1 (2 HSPs)
chr1 (78-240)||(51386959-51387128)
chr1 (53-122)||(22370287-22370356)
[»] chr4 (2 HSPs)
chr4 (58-131)||(13629545-13629618)
chr4 (66-122)||(19514448-19514504)
[»] chr2 (3 HSPs)
chr2 (66-122)||(41579254-41579310)
chr2 (104-173)||(39356711-39356780)
chr2 (66-118)||(28000674-28000726)
[»] chr7 (1 HSPs)
chr7 (61-122)||(39266853-39266914)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 282
Target Start/End: Original strand, 29134422 - 29134630
Alignment:
Q  78 gcttattagatcatgcaaccattagccctaatttttccctctaattatctatcattatatactaatgcatacaactctaaaatatttccctcctatgcaa 177  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||  |||||||||||||||| |||| |     
T  29134422 gcttattagatcatgcaaccattaaccctaatttttccctctaattatctatcattaaatgctaa-gcatacaatcctaaaatatttccctcgtatgaac 29134520  T
Q  178 gtacaatttgaatttcaaat-------tga-ctttggtgtatcccatgcaagcccaaataatctcccactcagcatgatttatgctgtttaccaaggc-a 268  Q
    ||||||||||||||||||||       ||| ||||||||||||| ||||||||||||||||||||| ||||    |||||||||| |||||||||||| |    
T  29134521 gtacaatttgaatttcaaatttcaaactgacctttggtgtatcctatgcaagcccaaataatctcctactc----tgatttatgcggtttaccaaggcaa 29134616  T
Q  269 tattaacgtgttac 282  Q
    ||||||||||||||    
T  29134617 tattaacgtgttac 29134630  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 60 - 282
Target Start/End: Original strand, 9460581 - 9460808
Alignment:
Q  60 acatctcttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaa-ttatctatcattatatactaatgcatacaactctaaa 158  Q
    ||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| || |||| ||||||||  |||||    
T  9460581 acatcccttattctaaatgcttattaggtcatgcaaccattaaccctaatttttccctctaatttatctatcattaaatgctaa-gcatacaatcctaaa 9460679  T
Q  159 atatttccctcctatgcaagtacaatttgaatttcaaat-------tga-ctttggtgtatcccatgcaagcccaaataatctcccactcagcatgattt 250  Q
    |||||||||||||||| |||| |||||||||||||||||       ||| ||||||||||||| |||||| |||||||||||||| ||||    ||||||    
T  9460680 atatttccctcctatgaaagttcaatttgaatttcaaatttcaaactgacctttggtgtatcctatgcaatcccaaataatctcctactc----tgattt 9460775  T
Q  251 atgctgtttaccaagg-catattaacgtgttac 282  Q
    |||| ||||||||||| ||||||||||||||||    
T  9460776 atgcggtttaccaaggccatattaacgtgttac 9460808  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 43808836 - 43808780
Alignment:
Q  66 cttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaat 122  Q
    |||| |||||| ||||||||| |||||| | ||||| ||||||||||||||||||||    
T  43808836 cttactctaaatgcttattaggtcatgctatcattaaccctaatttttccctctaat 43808780  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 18332595 - 18332409
Alignment:
Q  67 ttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaattatctatcattatatactaatgcatacaactctaaaatatttcc 166  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||         |||||| | |||     
T  18332595 ttattctaaatgcttattaaatcatgcaaccattaaccctaatttttccctctaattatctatcattaaatgctaatg---------ctaaaaaaattcg 18332505  T
Q  167 ctcctatgcaagtacaatttg-------aatttcaaattgac-tttggtgtatcccatgcaagcccaaataatctcccactcagcatgatttatgc 254  Q
    ||||||||||||| |||||||       ||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  18332504 ctcctatgcaagttcaatttgaatttaaaatttaaaattgacttttggtgtatcccatgcaagcccaaataatcatccactcagcatgatttatgc 18332409  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 21544912 - 21544814
Alignment:
Q  75 aaagcttattagatcatgcaaccattagccctaatttttccctctaattatctatcattatatactaatgcatacaactctaaaatatttccctcctat 173  Q
    |||| ||||||| || |||||||  ||  ||||||||||||||||||| |||| |||||| || ||||| |||||||| |||||| |||||||||||||    
T  21544912 aaagtttattaggtcttgcaacctctaaacctaatttttccctctaataatctgtcattaaatgctaatccatacaaccctaaaaaatttccctcctat 21544814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 34704055 - 34704123
Alignment:
Q  66 cttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaattatctatcatta 134  Q
    ||||||||||| ||||||||| || ||| || | ||  ||||||||||||||||||||||||| |||||    
T  34704055 cttattctaaatgcttattaggtcttgctactactaaacctaatttttccctctaattatctagcatta 34704123  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 51387128 - 51386959
Alignment:
Q  78 gcttattagatcatgcaaccattagccctaatttttccctctaattatctatcattatatactaatgcatacaactctaaaatatttccctcctatgcaa 177  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || |||| ||||||||  ||||||||||||||||||||| ||    
T  51387128 gcttattaggtcatgcaaccattaaccctaatttttccctctaattatctaacattaaatgctaa-gcatacaatcctaaaatatttccctcctatgaaa 51387030  T
Q  178 gtacaatttgaatttcaaat-------tga-ctttggtgtatcccatgcaagcccaaataatctcccactc 240  Q
    || |||||| ||||||||||       ||| ||||||||||| | ||||||||||||||||||||| ||||    
T  51387029 gttcaatttaaatttcaaatttcaaactgacctttggtgtattctatgcaagcccaaataatctcctactc 51386959  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 22370287 - 22370356
Alignment:
Q  53 cttacgtacatctcttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaat 122  Q
    ||||| || ||| |||| |||||| ||||||||| |||| | | ||||| ||||||||||||||||||||    
T  22370287 cttacttatatcccttactctaaatgcttattaggtcatactatcattaaccctaatttttccctctaat 22370356  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 13629545 - 13629618
Alignment:
Q  58 gtacatctcttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaattatctatca 131  Q
    ||||||| ||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  13629545 gtacatcccttattctaaatgcttatcaggtcatgcaaccattaaccctaatttttccctctaattatctatca 13629618  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 19514448 - 19514504
Alignment:
Q  66 cttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaat 122  Q
    |||||||||||||||||| || || ||||||| ||   |||||||||||||||||||    
T  19514448 cttattctaaaagcttataaggtcttgcaaccttttaacctaatttttccctctaat 19514504  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 41579254 - 41579310
Alignment:
Q  66 cttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaat 122  Q
    |||| |||||| ||||||||| |||||| | ||||| ||||||||||||||||||||    
T  41579254 cttactctaaatgcttattaggtcatgctatcattaaccctaatttttccctctaat 41579310  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 39356711 - 39356780
Alignment:
Q  104 cctaatttttccctctaattatctatcattatatactaatgcatacaactctaaaatatttccctcctat 173  Q
    ||||||||||||||||||| |||| ||||||  | ||||| || | ||| |||| |||||||||||||||    
T  39356711 cctaatttttccctctaataatctgtcattaattgctaatccacataaccctaatatatttccctcctat 39356780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 28000674 - 28000726
Alignment:
Q  66 cttattctaaaagcttattagatcatgcaaccattagccctaatttttccctc 118  Q
    ||||||||||| |||| |||| |||||| | ||||| ||||||||||||||||    
T  28000674 cttattctaaatgcttgttaggtcatgctatcattaaccctaatttttccctc 28000726  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 39266914 - 39266853
Alignment:
Q  61 catctcttattctaaaagcttattagatcatgcaaccattagccctaatttttccctctaat 122  Q
    |||||||||||||||| ||||||||| || ||| | ||||   |||||||||||||||||||    
T  39266914 catctcttattctaaatgcttattaggtcttgctatcatttaacctaatttttccctctaat 39266853  T

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