View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_23 (Length: 350)
Name: NF11897_low_23
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10182707 - 10183042
Alignment:
| Q |
1 |
tgtgtagtcacattgatgaggatattcttcaccttttcttcaagtgttgaataggcnnnnnnnnnnnntcttcggttatttgtacaatgggagcacacaa |
100 |
Q |
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| T |
10182707 |
tgtgtagtcatattgatgaggatattcttcaccttttcttcaagtgttgaataggcaaaaagaaaaaatcttcggttatttgtacaatgggagcacacaa |
10182806 |
T |
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| Q |
101 |
tatagccaaggtttgatatattgcaccaatacccctcggaccaccctaaattttttattttgcaccttagacccaaagttcatgtgaagattaaaaacca |
200 |
Q |
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| T |
10182807 |
tatagctgaggtttgatatattgcaccaatacccctcggaccaccctaaattttttattttgcaccttagacccaaagttcatgtgaagattaaaaacca |
10182906 |
T |
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| Q |
201 |
gtgaaatattttaaattgagttattgctactcatacgaataacaatggaaatcaatgaatcatccttgtccttgtcacaagaaaacctcaccctaaatgc |
300 |
Q |
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| T |
10182907 |
atgaaatatcttaaattgagttattgctactcatacgaataacaatggaaaccaatgaatcatccttgtccttgtcacaagaaaacctcaccctaaatgc |
10183006 |
T |
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| Q |
301 |
ttaaaagacgcattctctcctaaatcaagatgtttg |
336 |
Q |
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| T |
10183007 |
ttaaaagacgcattctctcctaaatcaagatgtttg |
10183042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 10179927 - 10179997
Alignment:
| Q |
140 |
accaccctaaattttttattttgcaccttagacccaaagttcatgtgaagattaaaaaccagtgaaatatt |
210 |
Q |
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| T |
10179927 |
accaccctaaattttttatttttcatcttaggtccaaagttcatgagaaggctaaaaactagggaaatatt |
10179997 |
T |
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