View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_26 (Length: 326)
Name: NF11897_low_26
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_26 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 47280876 - 47281197
Alignment:
| Q |
5 |
aattgccttcatcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatataaataactg |
104 |
Q |
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| T |
47280876 |
aattgccttcatcaccagctccgtttcaccatgtgcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatataaataaatg |
47280975 |
T |
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| Q |
105 |
agagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttcaagtcctac |
204 |
Q |
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| T |
47280976 |
agagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttacttatgacaggaagatccatttcaagtcctac |
47281075 |
T |
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| Q |
205 |
aagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaaaatgtcgatgttttctcgcaacatagtcaatgcagtt |
304 |
Q |
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| T |
47281076 |
aagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttcttgcaacatagtcaatgcagtt |
47281175 |
T |
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| Q |
305 |
attgcttcactatttgtggtta |
326 |
Q |
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| T |
47281176 |
attgcttcactagttgtggtta |
47281197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 71 - 326
Target Start/End: Original strand, 47275262 - 47275519
Alignment:
| Q |
71 |
aacaatcattgattaataattatataaataactgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaact |
170 |
Q |
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| T |
47275262 |
aacaatcattgattaataattatatgaataaatgagagtgaaaatgaagaaacaaagcaaagatgaagaactgaagattacagaacagatcccccca-ct |
47275360 |
T |
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| Q |
171 |
tacttatgaca---ggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaa |
267 |
Q |
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| T |
47275361 |
tacttacgacgaccggaaggtccgtctcaagttccacaagttcaagcagcttaagtccatccatgtcaggcaggtgcacatcagcgattaccaggtcaaa |
47275460 |
T |
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| Q |
268 |
aatgtcgatgttttctcgcaacatagtcaatgcagttattgcttcactatttgtggtta |
326 |
Q |
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| T |
47275461 |
cttgtctttgttttctcgcaacatagtcaatgccgtttttgcttgactagttgtcgtta |
47275519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 326
Target Start/End: Original strand, 49061160 - 49061323
Alignment:
| Q |
163 |
tcccaacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccagg |
262 |
Q |
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| T |
49061160 |
tccccacttacttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccagg |
49061259 |
T |
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| Q |
263 |
tcaaaaatgtcgatgttttctcgcaacatagtcaatgcagttattgcttcactatttgtggtta |
326 |
Q |
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| T |
49061260 |
tcaaacttgtctttgttttctctcaacatggtcaacgccgttattgcttgactagttgtggtta |
49061323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 49060999 - 49061056
Alignment:
| Q |
12 |
ttcatcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataa |
69 |
Q |
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| T |
49060999 |
ttcatcaccagctttgtatcaccatatgcagacaacactgaaatcaaacattttataa |
49061056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 34316118 - 34316047
Alignment:
| Q |
171 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
242 |
Q |
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| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 48870446 - 48870569
Alignment:
| Q |
167 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaa |
266 |
Q |
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| T |
48870446 |
aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa |
48870545 |
T |
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| Q |
267 |
aaatgtcgatgttttctcgcaaca |
290 |
Q |
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| T |
48870546 |
aattgtttttgttttctctcaaca |
48870569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 2888633 - 2888554
Alignment:
| Q |
167 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
246 |
Q |
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| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 2904736 - 2904657
Alignment:
| Q |
167 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
246 |
Q |
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| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2904657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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