View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_low_28 (Length: 318)

Name: NF11897_low_28
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_low_28
NF11897_low_28
[»] chr3 (7 HSPs)
chr3 (9-225)||(3817589-3817804)
chr3 (13-176)||(5164616-5164779)
chr3 (30-226)||(27149097-27149293)
chr3 (13-174)||(8434170-8434334)
chr3 (190-225)||(5165391-5165426)
chr3 (190-225)||(8435461-8435496)
chr3 (190-225)||(27149989-27150024)
[»] chr6 (1 HSPs)
chr6 (12-225)||(31742046-31742258)
[»] chr5 (4 HSPs)
chr5 (222-314)||(37843875-37843967)
chr5 (222-314)||(37851358-37851450)
chr5 (222-314)||(37845488-37845580)
chr5 (222-270)||(37838029-37838077)
[»] chr7 (2 HSPs)
chr7 (106-226)||(48119330-48119450)
chr7 (286-314)||(36866774-36866802)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 3817589 - 3817804
Alignment:
Q  9 catgtgttggtctgtgtgtacggctaaagtaattcaatatggggaatatgtatcataataaatgcatttgcataggaataggttgtatgtctccaactta 108  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  3817589 catgtgttggtctgtgtgtacggctaaagtagtttaacatggggaatatgtatcaaaataaatgcatttgcattggaataggttgcatgtctccaactta 3817688  T
Q  109 ataagggtataaatggaattacatatttaataaagtttaaatttaaagagattttcttataaaaaggaccnnnnnnnngtttcaaattgtctcttttata 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  3817689 ataagggtataaatggaattacatatttaataaagtttaaatttaaagagattttcttataaaaagga-aaaaaaaaagtttcaaattgtctcttttata 3817787  T
Q  209 aaggaccggagggagta 225  Q
    ||||| |||||||||||    
T  3817788 aaggatcggagggagta 3817804  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 5164779 - 5164616
Alignment:
Q  13 tgttggtctgtgtgtacggctaaagtaattcaatatggggaatatgtatcataataaatgcatttgcataggaataggttgtatgtctccaacttaataa 112  Q
    ||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  5164779 tgttggtctgtgtctactgctaaagtagttcaacatggggaatatgtatcaaaataaatgcatttgcattagaataggttgcatgtctccaacttaataa 5164680  T
Q  113 gggtataaatggaattacatatttaataaagtttaaatttaaagagattttcttataaaaagga 176  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164679 gggtataaatgaaattacatatttaataaagtttaaatttaaagagattttcttataaaaagga 5164616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 27149293 - 27149097
Alignment:
Q  30 ggctaaagtaattcaatatggggaatatgtatcataataaatgcatttgcataggaataggttgtatgtctccaacttaataagggtataaatggaatta 129  Q
    ||||||| || ||||| ||| |||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  27149293 ggctaaaatagttcaacatgtggaatatgtaccaaaataaatgcatttgcattggaataggttgcatgtctccaacttaataagggtataaatgaaatta 27149194  T
Q  130 catatttaataaagtttaaatttaaagagattttcttataaaaaggaccnnnnnnnngtttcaaattgtctcttttataaaggaccggagggagtat 226  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||        |||| |||||||||||| ||||||||||||||||||||||    
T  27149193 catatttgataaagtttgaatttaaagagattttcttataaaaaggaccaaaaaaaagttttaaattgtctcttgtataaaggaccggagggagtat 27149097  T

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Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 8434334 - 8434170
Alignment:
Q  13 tgttggtctgtgtgtacggctaaagtaattcaatatggggaatatgtatcataataaatgcatttgcataggaataggttgtatgtctccaacttaataa 112  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8434334 tgttggtttgtgtgtacggctaaagtagttcaacatggggaatatgtatcaaactaaatgcatttgcattggaataggttgcatgtctccaacttaataa 8434235  T
Q  113 gggtataaatggaattaca---tatttaataaagtttaaatttaaagagattttcttataaaaag 174  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||| | |||||||||||||    
T  8434234 gggtataaatggaattacatactatttaataaagtttaaatttaaagaggtattcttataaaaag 8434170  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 5165391 - 5165426
Alignment:
Q  190 tcaaattgtctcttttataaaggaccggagggagta 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  5165391 tcaaattgtctcttttataaaggaccggagggagta 5165426  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 8435461 - 8435496
Alignment:
Q  190 tcaaattgtctcttttataaaggaccggagggagta 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  8435461 tcaaattgtctcttttataaaggaccggagggagta 8435496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 27149989 - 27150024
Alignment:
Q  190 tcaaattgtctcttttataaaggaccggagggagta 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  27149989 tcaaattgtctcttttataaaggaccggagggagta 27150024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 31742258 - 31742046
Alignment:
Q  12 gtgttggtctgtgtgtacggctaaagtaattcaatatggggaatatgtatcataataaatgcatttgcataggaataggttgtatgtctccaacttaata 111  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  31742258 gtgttggcctgtgtgtacggctaaagtagttcaacatggggaatatgtatcaaaataaatgcatttgcattggaataggttgcatgtctccaacttaata 31742159  T
Q  112 agggtataaatggaattacatatttaataaagtttaaatttaaagagattttcttataaaaaggaccnnnnnnnngtttcaaattgtctcttttataaag 211  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||| ||||||     
T  31742158 agggtataaatgaaattacatatttaataaagtttaaatttaaagagattttcttataaaaaagaccaaaaaata-tttcaaattgtctcttgtataaat 31742060  T
Q  212 gaccggagggagta 225  Q
    ||||| ||||||||    
T  31742059 gaccgaagggagta 31742046  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 37843875 - 37843967
Alignment:
Q  222 agtattttctaacatgtttacattgtttcccgtgacagagaatgcatatgcaatggtgcaaagcagaaagtctgatgtatatagctatggagt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37843875 agtattttctaacatgtttacattgtttcccgtgacagagaatgcatatgcaatagtgcaaagcagaaagtctgatgtatatagctatggagt 37843967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 37851358 - 37851450
Alignment:
Q  222 agtattttctaacatgtttacattgtttcccgtgacagagaatgcatatgcaatggtgcaaagcagaaagtctgatgtatatagctatggagt 314  Q
    ||||||||||||||||||| |||||||  | |||||||||||||||||||   | ||||   | || |||||||||||||||||||| |||||    
T  37851358 agtattttctaacatgtttgcattgttatctgtgacagagaatgcatatgatgtagtgccgggaaggaagtctgatgtatatagctacggagt 37851450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 37845488 - 37845580
Alignment:
Q  222 agtattttctaacatgtttacattgtttcccgtgacagagaatgcatatgcaatggtgcaaagcagaaagtctgatgtatatagctatggagt 314  Q
    |||||| |||||||||||| ||||||  || |||||||| |||||| |||||    |||| | |||||||||||||||||| ||||| |||||    
T  37845488 agtattctctaacatgtttgcattgtcacctgtgacagaaaatgcaaatgcagcaatgcacaacagaaagtctgatgtatacagctacggagt 37845580  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 37838029 - 37838077
Alignment:
Q  222 agtattttctaacatgtttacattgtttcccgtgacagagaatgcatat 270  Q
    |||||| |||||||||||| |||||||| | |||||||| |||||||||    
T  37838029 agtattctctaacatgtttgcattgttttctgtgacagaaaatgcatat 37838077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 48119450 - 48119330
Alignment:
Q  106 ttaataagggtataaatggaattacatatttaataaagtttaaatttaaagagattttcttataaaaaggaccnnnnnnnngtttcaaattgtctctttt 205  Q
    ||||||||| | |||||||||||  |||||| |||||||||||||||||||||  ||||||||||||||||||        || |||||||||||||| |    
T  48119450 ttaataaggttttaaatggaattgtatatttgataaagtttaaatttaaagagtgtttcttataaaaaggaccaaaagaaagtctcaaattgtctcttat 48119351  T
Q  206 ataaaggaccggagggagtat 226  Q
    | |||||||||||||||||||    
T  48119350 aaaaaggaccggagggagtat 48119330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 36866774 - 36866802
Alignment:
Q  286 agaaagtctgatgtatatagctatggagt 314  Q
    |||||||||||||||||||||||||||||    
T  36866774 agaaagtctgatgtatatagctatggagt 36866802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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