View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_low_3 (Length: 823)

Name: NF11897_low_3
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_low_3
NF11897_low_3
[»] chr8 (26 HSPs)
chr8 (23-790)||(35061982-35062749)
chr8 (277-788)||(10552047-10552557)
chr8 (418-787)||(30235918-30236289)
chr8 (493-787)||(41791055-41791350)
chr8 (478-783)||(32945500-32945804)
chr8 (328-641)||(17720644-17720956)
chr8 (138-257)||(18070464-18070579)
chr8 (475-579)||(15906663-15906767)
chr8 (277-385)||(30236292-30236400)
chr8 (482-638)||(17656943-17657099)
chr8 (40-136)||(18069905-18070001)
chr8 (482-582)||(36630821-36630921)
chr8 (482-551)||(15821407-15821476)
chr8 (474-555)||(9519475-9519556)
chr8 (401-638)||(10248494-10248731)
chr8 (484-555)||(31207386-31207457)
chr8 (509-555)||(24995419-24995465)
chr8 (509-555)||(37986882-37986928)
chr8 (482-551)||(32066323-32066392)
chr8 (482-555)||(34389029-34389102)
chr8 (475-583)||(12198065-12198173)
chr8 (475-583)||(12442493-12442601)
chr8 (494-548)||(5221869-5221923)
chr8 (507-553)||(23264715-23264761)
chr8 (509-555)||(41893424-41893470)
chr8 (518-555)||(16457485-16457522)
[»] chr7 (33 HSPs)
chr7 (283-784)||(38485342-38485845)
chr7 (277-776)||(46133085-46133580)
chr7 (636-775)||(9349847-9349986)
chr7 (283-622)||(13311623-13311963)
chr7 (362-625)||(47456976-47457233)
chr7 (493-623)||(12480881-12481012)
chr7 (471-638)||(3478325-3478492)
chr7 (401-591)||(11379114-11379305)
chr7 (482-638)||(24324738-24324895)
chr7 (477-638)||(8745132-8745293)
chr7 (498-625)||(9428059-9428186)
chr7 (472-622)||(42533210-42533359)
chr7 (457-609)||(1320753-1320906)
chr7 (482-551)||(6584893-6584962)
chr7 (457-625)||(36449043-36449211)
chr7 (482-603)||(6716712-6716833)
chr7 (508-581)||(9349759-9349832)
chr7 (475-551)||(34389939-34390015)
chr7 (506-641)||(48058592-48058727)
chr7 (497-583)||(23983194-23983280)
chr7 (482-555)||(10244166-10244239)
chr7 (476-584)||(16828930-16829039)
chr7 (482-555)||(38306245-38306318)
chr7 (482-584)||(16954637-16954740)
chr7 (497-555)||(33435108-33435166)
chr7 (509-551)||(47325913-47325955)
chr7 (509-550)||(1820031-1820072)
chr7 (482-555)||(5860312-5860385)
chr7 (482-535)||(44755610-44755663)
chr7 (497-609)||(3419624-3419738)
chr7 (472-551)||(41089776-41089855)
chr7 (513-555)||(37795004-37795046)
chr7 (509-547)||(46262151-46262189)
[»] chr1 (34 HSPs)
chr1 (283-785)||(4651573-4652067)
chr1 (283-638)||(50589148-50589502)
chr1 (577-745)||(35250110-35250278)
chr1 (284-555)||(38544762-38545033)
chr1 (558-784)||(2987912-2988141)
chr1 (283-583)||(17033370-17033672)
chr1 (362-641)||(19598506-19598779)
chr1 (647-785)||(11839372-11839509)
chr1 (517-638)||(27102210-27102331)
chr1 (474-551)||(46814495-46814572)
chr1 (472-551)||(24658903-24658982)
chr1 (482-550)||(7857637-7857705)
chr1 (472-555)||(9313313-9313396)
chr1 (474-551)||(27031868-27031945)
chr1 (474-625)||(34774847-34774998)
chr1 (647-783)||(17993913-17994051)
chr1 (477-555)||(31585784-31585862)
chr1 (477-623)||(32864517-32864663)
chr1 (477-638)||(6583157-6583318)
chr1 (482-555)||(41920436-41920509)
chr1 (514-633)||(10785406-10785524)
chr1 (483-597)||(42374148-42374263)
chr1 (482-625)||(24684430-24684575)
chr1 (503-553)||(30655565-30655615)
chr1 (509-581)||(46692817-46692889)
chr1 (482-581)||(5389419-5389518)
chr1 (566-655)||(28395013-28395103)
chr1 (509-550)||(5459172-5459213)
chr1 (496-553)||(15840938-15840995)
chr1 (482-555)||(30685928-30686001)
chr1 (440-555)||(46603334-46603449)
chr1 (509-547)||(38564912-38564950)
chr1 (495-552)||(2877634-2877691)
chr1 (474-583)||(16147531-16147640)
[»] chr5 (26 HSPs)
chr5 (343-786)||(31721522-31721966)
chr5 (288-611)||(24072235-24072558)
chr5 (355-638)||(39184126-39184412)
chr5 (362-600)||(27712939-27713171)
chr5 (288-625)||(8730706-8731045)
chr5 (484-782)||(39024238-39024545)
chr5 (501-641)||(22675262-22675402)
chr5 (401-555)||(7392055-7392209)
chr5 (323-641)||(17854004-17854326)
chr5 (477-632)||(8297447-8297602)
chr5 (493-624)||(13954189-13954320)
chr5 (482-609)||(33258852-33258979)
chr5 (472-638)||(14302371-14302537)
chr5 (498-609)||(25992007-25992118)
chr5 (474-555)||(34378074-34378155)
chr5 (477-555)||(7195263-7195341)
chr5 (714-781)||(36979123-36979191)
chr5 (513-638)||(21402778-21402903)
chr5 (493-555)||(23426339-23426401)
chr5 (691-753)||(31742359-31742421)
chr5 (498-555)||(29087481-29087538)
chr5 (482-550)||(698345-698413)
chr5 (495-551)||(12046252-12046308)
chr5 (717-778)||(24436031-24436095)
chr5 (498-584)||(26045959-26046045)
chr5 (363-431)||(22675461-22675530)
[»] chr2 (41 HSPs)
chr2 (362-787)||(18680929-18681358)
chr2 (277-783)||(31902216-31902715)
chr2 (318-601)||(4471743-4472026)
chr2 (562-778)||(12793530-12793747)
chr2 (287-625)||(22885087-22885425)
chr2 (363-624)||(15126365-15126620)
chr2 (668-785)||(9926384-9926500)
chr2 (288-624)||(27739766-27740101)
chr2 (475-625)||(16959959-16960109)
chr2 (288-601)||(25504886-25505201)
chr2 (507-704)||(915328-915524)
chr2 (505-625)||(33788586-33788706)
chr2 (510-624)||(2062901-2063015)
chr2 (482-631)||(1269467-1269616)
chr2 (325-625)||(29486957-29487258)
chr2 (498-638)||(10173518-10173659)
chr2 (495-582)||(14405195-14405282)
chr2 (519-625)||(16952336-16952443)
chr2 (519-625)||(17023001-17023108)
chr2 (519-625)||(17060307-17060414)
chr2 (516-638)||(34230219-34230341)
chr2 (482-555)||(39338889-39338962)
chr2 (401-541)||(14566350-14566489)
chr2 (484-551)||(7874277-7874344)
chr2 (482-551)||(14106552-14106621)
chr2 (519-611)||(17079190-17079283)
chr2 (477-638)||(37770583-37770743)
chr2 (520-610)||(3745356-3745447)
chr2 (497-555)||(23650384-23650442)
chr2 (287-455)||(2062701-2062865)
chr2 (519-599)||(27880110-27880189)
chr2 (494-550)||(36276200-36276256)
chr2 (528-638)||(7695993-7696102)
chr2 (482-555)||(387157-387230)
chr2 (509-550)||(10524108-10524149)
chr2 (675-750)||(29044684-29044760)
chr2 (563-638)||(41086738-41086813)
chr2 (483-602)||(13337259-13337378)
chr2 (366-431)||(3745227-3745293)
chr2 (509-547)||(4162052-4162090)
chr2 (290-388)||(16959818-16959916)
[»] chr3 (28 HSPs)
chr3 (277-787)||(30935178-30935694)
chr3 (283-787)||(1652677-1653183)
chr3 (483-623)||(5556555-5556696)
chr3 (364-625)||(47945577-47945833)
chr3 (400-638)||(823375-823614)
chr3 (669-770)||(34574847-34574948)
chr3 (362-641)||(27398821-27399102)
chr3 (277-600)||(25594499-25594822)
chr3 (484-638)||(14879421-14879576)
chr3 (484-555)||(19176488-19176559)
chr3 (508-625)||(33143902-33144020)
chr3 (495-559)||(30127259-30127323)
chr3 (482-584)||(37123366-37123468)
chr3 (497-555)||(43012374-43012432)
chr3 (482-584)||(14193924-14194028)
chr3 (508-638)||(14755205-14755336)
chr3 (509-555)||(17550968-17551014)
chr3 (538-623)||(38488835-38488921)
chr3 (513-582)||(39021273-39021342)
chr3 (482-550)||(34475783-34475851)
chr3 (401-548)||(23328381-23328527)
chr3 (484-638)||(25647670-25647826)
chr3 (471-552)||(31424209-31424290)
chr3 (484-549)||(40023602-40023667)
chr3 (482-551)||(45398780-45398849)
chr3 (507-547)||(20710740-20710780)
chr3 (508-555)||(9584077-9584124)
chr3 (516-555)||(20611801-20611840)
[»] chr4 (36 HSPs)
chr4 (301-679)||(35800293-35800670)
chr4 (283-625)||(12295959-12296302)
chr4 (289-598)||(46698765-46699075)
chr4 (363-638)||(38929698-38929967)
chr4 (496-623)||(16501729-16501858)
chr4 (579-724)||(43373949-43374094)
chr4 (474-625)||(28966843-28966994)
chr4 (476-630)||(22811109-22811263)
chr4 (400-609)||(25753074-25753283)
chr4 (495-603)||(49747524-49747632)
chr4 (482-638)||(53823362-53823518)
chr4 (401-603)||(19673004-19673205)
chr4 (315-447)||(50102351-50102484)
chr4 (482-582)||(31050659-31050759)
chr4 (490-620)||(24740061-24740192)
chr4 (494-584)||(6599940-6600030)
chr4 (402-555)||(21387228-21387379)
chr4 (482-638)||(2061679-2061835)
chr4 (401-555)||(19815248-19815402)
chr4 (362-541)||(21987964-21988137)
chr4 (528-638)||(41117908-41118018)
chr4 (509-638)||(38637174-38637302)
chr4 (494-546)||(2825779-2825831)
chr4 (474-553)||(19311369-19311446)
chr4 (477-584)||(39421008-39421115)
chr4 (494-552)||(36962642-36962700)
chr4 (495-623)||(43076975-43077107)
chr4 (474-555)||(4305701-4305782)
chr4 (482-555)||(8255011-8255084)
chr4 (482-555)||(8268429-8268502)
chr4 (509-553)||(39041300-39041344)
chr4 (543-641)||(21983759-21983857)
chr4 (509-547)||(40813813-40813851)
chr4 (283-348)||(28966671-28966736)
chr4 (569-638)||(49528143-49528212)
chr4 (507-544)||(53756765-53756802)
[»] chr6 (21 HSPs)
chr6 (278-778)||(12793894-12794385)
chr6 (478-751)||(26215846-26216119)
chr6 (457-638)||(32935280-32935461)
chr6 (493-641)||(26534653-26534805)
chr6 (495-623)||(21266110-21266238)
chr6 (499-641)||(9224042-9224185)
chr6 (401-568)||(33968624-33968791)
chr6 (474-638)||(20701744-20701908)
chr6 (495-623)||(21264983-21265111)
chr6 (481-555)||(16510325-16510399)
chr6 (509-553)||(34090374-34090418)
chr6 (362-431)||(13098711-13098781)
chr6 (495-553)||(34105410-34105468)
chr6 (476-641)||(13098509-13098674)
chr6 (493-625)||(20499914-20500047)
chr6 (278-346)||(26216140-26216207)
chr6 (362-429)||(9223905-9223972)
chr6 (514-553)||(9239224-9239263)
chr6 (513-555)||(3117508-3117550)
chr6 (485-539)||(3880623-3880677)
chr6 (670-759)||(21266278-21266367)
[»] scaffold1613 (1 HSPs)
scaffold1613 (284-555)||(1041-1312)
[»] scaffold0200 (1 HSPs)
scaffold0200 (482-631)||(19367-19516)
[»] scaffold0119 (1 HSPs)
scaffold0119 (482-631)||(42086-42235)
[»] scaffold0050 (1 HSPs)
scaffold0050 (482-632)||(36691-36843)
[»] scaffold0620 (1 HSPs)
scaffold0620 (509-553)||(3841-3885)
[»] scaffold0063 (1 HSPs)
scaffold0063 (485-609)||(58114-58238)
[»] scaffold0499 (1 HSPs)
scaffold0499 (478-625)||(6538-6685)
[»] scaffold0068 (1 HSPs)
scaffold0068 (509-550)||(35800-35841)


Alignment Details
Target: chr8 (Bit Score: 704; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 23 - 790
Target Start/End: Original strand, 35061982 - 35062749
Alignment:
Q  23 catgcaaacccaatcccaaggattttgatagaaatccagaatttgctgaaacaattggtggttatctaaatgatcgtcagaagacatagcccatagtaag 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35061982 catgcaaacccaattccaaggattttgatagaaatccagaatttgctgaaacaattggtggttatctaaatgatcgtcagaagacatagcccatagttag 35062081  T
Q  123 caacatcatctattaagagtagcaacttcaaattactttccaactacgatgcataccaagattaaatcaatcaagcttgattcatttgcagatggaagac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  35062082 caacatcatctattaagagtagcaacttcaaattactttccaactacgatgcataccaagattaaatcaatcgagcttgattcatttgtagatggaagac 35062181  T
Q  223 aaactaagaaaaaacaggaacaaaatactccacactaagtaagactggattttgagggtattttgagggtgtgtgcccttcgagttgagctctttttcct 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35062182 aaactaagaaaaaacaggaacaaaatactccacactaagtaagactggattttgagggtattttgagggtgtgtgcccttcgagttgagctctttttcct 35062281  T
Q  323 atttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattcattttgcttcgagatcgggagtt 422  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35062282 atttgattgatgtttgctccaccgcaagtcacgtcgtccgtcttacttattgtgtgctggattctgatgagccattcattttgcttcgagatcgggagtt 35062381  T
Q  423 ggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccg 522  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  35062382 ggcgtctagaggcattattgtttggttggctacagtgtttcactgaaagatcgagggtaaggggtgcctctctgatttggttctgaagtctggtgggccg 35062481  T
Q  523 atcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtgg 622  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35062482 atcgattttgattcgagatcgagagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtgg 35062581  T
Q  623 aaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagta 722  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  35062582 aaggtgaatgatctttagagaaggagttcttcggaggtggcacaatgttggtgatgaggactgggttctcttttacaagggtgttctcttgaggtgagta 35062681  T
Q  723 gtggtgacgagtgttatggatgttgttttttagtggttggttagtataggagtcagttttaggggagg 790  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35062682 gtggcgacgagtgttatggatgttgttttttagtggttggttagtatatgagtcagttttaggggagg 35062749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 277 - 788
Target Start/End: Original strand, 10552047 - 10552557
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagctcttttt-cctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgt 375  Q
    ||||| ||||||||||||||| |||||||| || ||| ||||| ||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  10552047 agggtgttttgagggtgtgtgtccttcgagctgcgcttttttttcctttttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgt 10552146  T
Q  376 gtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcg 475  Q
    |||||||||| ||||| |||  ||||||||||||||||||||||||||||| |||| | |||||||||||| ||| ||||||||||||||||  ||| |     
T  10552147 gtgctggattttgatgggccgatcattttgcttcgagatcgggagttggcgcctagcgacattattgtttgattgactacagtgtttctctggtagacca 10552246  T
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttg 575  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10552247 ggggcaaggggtgccc-tctgatttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggttctagtttggttttg 10552345  T
Q  576 ggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtg 675  Q
     |||||||||||||| |||||| ||| | |||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |    
T  10552346 tgctttttaggtgttacttcgggggacc-gaggttgcgttgtggtggaagctgaatgatctttagagaagaagttcttcggaggtggcacagtgttggag 10552444  T
Q  676 atgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagtataggagt 775  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||    
T  10552445 atgaggactgggttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagttttatggatgtcgttttttagtggttgcttagtatatgagt 10552544  T
Q  776 cagttttagggga 788  Q
    |||||||||||||    
T  10552545 cagttttagggga 10552557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 418 - 787
Target Start/End: Complemental strand, 30236289 - 30235918
Alignment:
Q  418 gagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtg 517  Q
    ||||||| |||||| |||||||| |||||||||||||| |||||||||||   || |||||||||||||||||| |||||||||||| ||||||||||||    
T  30236289 gagttggagtctagtggcattatggtttggttggctacggtgtttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtg 30236190  T
Q  518 ggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggct-ttttaggtgttccttcggtggatcagaggttgcgcgg 616  Q
    || |||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||| |||| ||||||   |||||||| ||||| |||||| |    
T  30236189 ggacgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctttttttggtgttgtatcggtggaccagagattgcgcag 30236090  T
Q  617 tggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgagg 716  Q
    ||||||||| ||| ||| ||||||| ||||||||||| ||| ||| | |  |||||||  |||||| ||| || ||| || | |||||||||  ||| ||    
T  30236089 tggtggaagctgattgatctttagaaaagaagttctttggatgtgactcggtgttggtattgaggactggtttctctcttgctagggtgttcgtttgtgg 30235990  T
Q  717 tgagtagtggtgacgagtgttatggatgttgttt-tttagtggttggttagtataggagtcagttttagggg 787  Q
    |||||||||| || ||||||||||||||| |||| |||| |||| ||||| |||||||||||||||||||||    
T  30235989 tgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcggttaatataggagtcagttttagggg 30235918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 493 - 787
Target Start/End: Complemental strand, 41791350 - 41791055
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttcc 592  Q
    ||||||||||||||||||    ||||| |||||| |||||||||||||||| |||||| |||| | |||| ||||| ||||||| |||||| ||||||      
T  41791350 tctgatttggttctgaagataagtgggtcgatcgcttttgattcgagatcgagagtcacttctttggttcaagtttagttttggacttttttggtgttat 41791251  T
Q  593 ttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatc 692  Q
    |||| ||||  ||||||||||||||||||||||  || |||  ||| || ||| |||||||| || ||| | || | ||||||||||||| ||| |  ||    
T  41791250 ttcgatggactagaggttgcgcggtggtggaagcggattgatatttggaaaaggagttcttcagatgtgactcacttttggtgatgaggactggttcctc 41791151  T
Q  693 ttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtcagttttagggg 787  Q
    ||||||||||||||||| ||||||||||||||||||| ||| |||||| |||| ||||||| ||||||  || |||||| ||||||||||||||||    
T  41791150 ttttacaagggtgttcttttgaggtgagtagtggtgatgagggttatgaatgtcgttttttcagtggtcagtaagtatatgagtcagttttagggg 41791055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 478 - 783
Target Start/End: Complemental strand, 32945804 - 32945500
Alignment:
Q  478 ggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttggg 577  Q
    |||||| ||||| | ||||||||| ||||||||| | |||||| ||||  ||||||||||||||||||||||| |||| |  ||| ||||||||||||||    
T  32945804 ggtaagaggtgctcttctgatttgattctgaagtatagtgggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttggg 32945705  T
Q  578 ctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgat 677  Q
    |||||| | ||||| |||||||||   ||||| || | ||| |||||| ||||||| ||||||| |||||||||||| || ||| | |  ||||||||||    
T  32945704 cttttttgatgttctttcggtggactggaggtcgcac-gtgatggaagctgaatgatctttagaaaagaagttcttcagatgtgactcggtgttggtgat 32945606  T
Q  678 gaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagtataggagtca 777  Q
    || || ||| || | ||||||||  ||||||| |||||||||||||||| || ||||||||||||||| ||| |||    || |||  ||||||||||||    
T  32945605 gatgactggtttcttttttacaaaagtgttcttttgaggtgagtagtggcgatgagtgttatggatgtcgttctttcagcgtcggtaggtataggagtca 32945506  T
Q  778 gtttta 783  Q
    ||||||    
T  32945505 gtttta 32945500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 328 - 641
Target Start/End: Complemental strand, 17720956 - 17720644
Alignment:
Q  328 attgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagcc-attcattttgcttcgagatcgggagttggcg 426  Q
    |||||||||| | |||||| ||  || ||||||  |||||| | ||||||||||||||||| || ||| |||  |||||||| ||||||| |||||||||    
T  17720956 attgatgtttgcaccaccgaaaaatatgtcgtctttcttacattttgtgtgctggattctggtgggccgattacttttgctttgagatcgagagttggcg 17720857  T
Q  427 tctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcg 526  Q
    | |||  ||||| |||||||| ||||| | ||||| |||||   || | |||||||||||||||  |||| |||||| || |||| |||||||| |||||    
T  17720856 tatagctgcattcttgtttggctggctcc-gtgttcctctggtggaccaggggtaaggggtgcctgtctggtttggtcctaaagtatggtgggctgatcg 17720758  T
Q  527 attttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaagg 626  Q
     |||||||||| ||||||||||||||||| | |||| | || ||||||||||| ||| ||||||| |||||||||   ||||||| | |||||||||||     
T  17720757 cttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggctgttttggtgttctttcggtggacttgaggttgagaggtggtggaagt 17720659  T
Q  627 tgaatgacctttaga 641  Q
    ||| ||| |||||||    
T  17720658 tgattgatctttaga 17720644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 18070464 - 18070579
Alignment:
Q  138 agagtagcaacttcaaattactttccaactacgatgcataccaagattaaatcaatcaagcttgattcatttgcagatggaagacaaactaagaaaaaac 237  Q
    ||||||||| ||||||||||||||||| ||| |||    |||||||||||||||||  ||||||||| |||||||||||||||| | |||||||||||||    
T  18070464 agagtagcagcttcaaattactttccatctatgat----accaagattaaatcaattgagcttgattaatttgcagatggaagagagactaagaaaaaac 18070559  T
Q  238 aggaacaaaatactccacac 257  Q
    ||||||||||||||||||||    
T  18070560 aggaacaaaatactccacac 18070579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 579
Target Start/End: Original strand, 15906663 - 15906767
Alignment:
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt 574  Q
    |||||| | |||||||| | || |||||| |||||||||||||||||||||   ||||||||||||||||||||||||||| | |||| |||||||||||    
T  15906663 gggggttaagggtgcccgtttggtttggtcctgaagtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggtttt 15906762  T
Q  575 gggct 579  Q
    |||||    
T  15906763 gggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 30236400 - 30236292
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 376  Q
    ||||||||||||||||||||| |||||||| ||||   |||||||| |||||||||||||| ||||||||| | | | |||| |||||||||||||||||    
T  30236400 agggtattttgagggtgtgtgtccttcgagctgagtgttttttcctttttgattgatgtttgctccaccgccaatcatgtcgcccgtcttacttattgtg 30236301  T
Q  377 tgctggatt 385  Q
    || ||||||    
T  30236300 tgttggatt 30236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 482 - 638
Target Start/End: Complemental strand, 17657099 - 17656943
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| ||| | ||||  || |||| ||||||| |||||  |||||||||||||||||||||||||||| | | || ||||||||||||| ||||    
T  17657099 aggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggacttt 17657000  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| |  ||| ||||||||||| ||||| |   ||||||||||| ||||||| ||||    
T  17656999 ttatggtttctttcggtggatcggaggtcgataggtggtggaagctgaatgatcttt 17656943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 18069905 - 18070001
Alignment:
Q  40 aaggattttgatagaaatccagaatttgctgaaacaattggtggttatctaaatgatcgtcagaagacatagcccatagtaagcaacatcatctatt 136  Q
    |||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||| | ||||| || || ||| ||||||||||||||| ||||    
T  18069905 aaggattttgatagaaatccagaatttgctgaaatacttggtgattatctagatgatcctgagaaggcacagtccagagtaagcaacatcatttatt 18070001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 582
Target Start/End: Original strand, 36630821 - 36630921
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||  || |||||||||| ||||||||||||||||||  |||| ||||||||||||| ||||||||| |   ||||||||| |||||||||||    
T  36630821 aggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggcttt 36630920  T
Q  582 t 582  Q
    |    
T  36630921 t 36630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 482 - 551
Target Start/End: Complemental strand, 15821476 - 15821407
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||||  ||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||    
T  15821476 aggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcag 15821407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 555
Target Start/End: Original strand, 9519475 - 9519556
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||| ||||||||||  || ||||||| ||  ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  9519475 cgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttct 9519556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 401 - 638
Target Start/End: Complemental strand, 10248731 - 10248494
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    ||||||||||||||||||||| || ||||||  ||| | |||||||| | | |   |||||||||||    | ||||||| ||||||| || ||| ||||    
T  10248731 ttttgcttcgagatcgggagtcggtgtctagctgcaattttgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattt 10248632  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtgg 600  Q
     || || || | |||||| ||||||  ||||||||| |||||||||||||||||| | | || |||||||||||  ||||| || |  ||| || |||||    
T  10248631 tgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtttggttttttgctttatatggtttcttttggtgg 10248532  T
Q  601 atcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| ||||  ||| ||||||||||| ||| ||| ||||    
T  10248531 atcggaggccgcgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 555
Target Start/End: Complemental strand, 31207457 - 31207386
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||  || ||||||| ||  |||||||||||||||||  ||||||||||||||||||||||||||||    
T  31207457 gggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 31207386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 24995465 - 24995419
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagttct 24995419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 37986928 - 37986882
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||    
T  37986928 agtctggtgggccaatcatttttgattcgagatcgggagtcagttct 37986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 551
Target Start/End: Complemental strand, 32066392 - 32066323
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||  ||||||||||| ||||||||||||    
T  32066392 aggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcag 32066323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 34389102 - 34389029
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||  |||||||||||||||  |||||||||||    
T  34389102 aggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttct 34389029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 475 - 583
Target Start/End: Complemental strand, 12198173 - 12198065
Alignment:
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt 574  Q
    |||||||||| |||| | ||| |||||||  ||||||||||||| ||||||  |||| |||  | || ||||||||||||| | | || |||||||||||    
T  12198173 gggggtaaggtgtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggtttt 12198074  T
Q  575 gggcttttt 583  Q
    | |||||||    
T  12198073 gagcttttt 12198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 475 - 583
Target Start/End: Complemental strand, 12442601 - 12442493
Alignment:
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt 574  Q
    |||||||||| |||| | ||| |||||||  ||||||||||||| ||||||  |||| |||  | || ||||||||||||| | | || |||||||||||    
T  12442601 gggggtaaggtgtgctcttctaatttggtcatgaagtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggtttt 12442502  T
Q  575 gggcttttt 583  Q
    | |||||||    
T  12442501 gagcttttt 12442493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 494 - 548
Target Start/End: Complemental strand, 5221923 - 5221869
Alignment:
Q  494 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagt 548  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| ||| |||||    
T  5221923 ctgatttggttttggaggctggtgggccgatcgcttttgattcgaaatcaggagt 5221869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 507 - 553
Target Start/End: Original strand, 23264715 - 23264761
Alignment:
Q  507 gaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    |||||||| ||| || ||| |||||||||||||||||||||||||||    
T  23264715 gaagtctgatggacctatcaattttgattcgagatcgggagtcagtt 23264761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 555
Target Start/End: Complemental strand, 41893470 - 41893424
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||||| | |  ||||||||||||||||||||||||||||    
T  41893470 agtctggtgggccaaccacttttgattcgagatcgggagtcagttct 41893424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 555
Target Start/End: Complemental strand, 16457522 - 16457485
Alignment:
Q  518 ggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  16457522 ggccgatcacttttgattcgagatcgggagtcagttct 16457485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 283 - 784
Target Start/End: Original strand, 38485342 - 38485845
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    |||| |||||||||| |||||||| |||||| |||||||  |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||    
T  38485342 ttttaagggtgtgtgtccttcgagctgagctttttttcccttttgattgatgtttgctccaccgcaagtcacgtcgtctgtcttacttattgtgtgctgg 38485441  T
Q  383 attctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaa 482  Q
    ||| ||||| |||  ||||||||||||||| |||| ||||| | ||||| |||||||||||||||||||||| ||||||||||||   ||  ||||||||    
T  38485442 attttgatgggccgatcattttgcttcgagttcgg-agttgacatctagcggcattattgtttggttggctatagtgtttctctggtggactgggggtaa 38485540  T
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt 582  Q
    ||||||||| ||||| || ||||||||||||||||||||||||  |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  38485541 ggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagta-tctggttctagtttggttttgggctttt 38485639  T
Q  583 taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgagga 682  Q
    | |||||||||||| |||| | |||||||| |||||||||||| ||||||| ||||||||||| |||||||| || ||||| || |||||||||| ||||    
T  38485640 ttggtgttccttcgatggaccggaggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggctcattgttggtgataagga 38485739  T
Q  683 ttgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatg----ttgttttttagtggttggttagtataggagtcag 778  Q
     | |||| |||||||||| |||||||| ||||||||||| |||| |||||||||| ||||||    || ||||| |||||||||| | ||||||||||||    
T  38485740 cttggttctcttttacaaaggtgttcttttgaggtgagttgtggcgacgagtgttttggatgtcatttttttttcagtggttggtaactataggagtcag 38485839  T
Q  779 ttttag 784  Q
    ||||||    
T  38485840 ttttag 38485845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 277 - 776
Target Start/End: Complemental strand, 46133580 - 46133085
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 376  Q
    ||||| |||||| | |||||| |||||||| |||||| |||||||  |||||||||||||| ||| || |||||| |||| ||  ||||| ||||| |||    
T  46133580 agggtgttttgaagatgtgtgtccttcgagatgagctttttttcccttttgattgatgtttgctcaactgcaagtcacgttgttggtcttgcttatagtg 46133481  T
Q  377 tgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgg 476  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||| || ||  ||||||||||||||||||||| | |||||||||||   || |||    
T  46133480 tgctggattctgatgggccagtcattttgctttgagatcgggagttggagtttaatggcattattgtttggttggcttcggtgtttctctggtggaccgg 46133381  T
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttgg-ttttg 575  Q
     ||| ||| |||||| ||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||| |||||    
T  46133380 aggttaggagtgcccttctgatttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttg 46133281  T
Q  576 ggc-tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggt 674  Q
    ||| ||||| ||||||||||||||||| | ||||||||| ||||| ||||| ||| ||| ||||||| ||  ||||||| ||| ||| | |  |||||||    
T  46133280 ggctttttttggtgttccttcggtggaccggaggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggt 46133181  T
Q  675 gatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtatagga 773  Q
    ||||| || |||||| |||||||||| ||||||       ||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||||||| ||    
T  46133180 gatgatgactgggttctcttttacaa-ggtgtt------tggtgagtagtggcaacgagtgttttggatgtcgttttttcagtggttggttagtataaga 46133088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 636 - 775
Target Start/End: Original strand, 9349847 - 9349986
Alignment:
Q  636 tttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtg 735  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||| |||| ||| ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  9349847 tttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcgacgagtg 9349946  T
Q  736 ttatggatgttgttttttagtggttggttagtataggagt 775  Q
    |||||||||| ||||| ||||||||||| |||||||||||    
T  9349947 ttatggatgtcgttttctagtggttggtaagtataggagt 9349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 283 - 622
Target Start/End: Original strand, 13311623 - 13311963
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    ||||||||||||||| |||| ||| ||| |  |||||| | |||||||||||||| | |||||||   | |  ||||| ||||||| | |||||||||||    
T  13311623 ttttgagggtgtgtgtccttagagctgatcattttttctt-tttgattgatgtttgcaccaccgcttatcagttcgtctgtcttacattttgtgtgctgg 13311721  T
Q  383 attctgatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggt-tggctacagtgtttctctgaaagatcgggggt 480  Q
    |||||| || ||| | |  |||| ||||||||||||||||||| |||||   ||||| || ||| |  || || |  ||||||||||   || ||||| |    
T  13311722 attctggtgggccgagtacttttccttcgagatcgggagttggtgtctaactgcattcttattttgactgacttcgttgtttctctggtggaccggggat 13311821  T
Q  481 aaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctt 580  Q
    ||||||||||| |||| ||||||  || |||||||||||||||||  |||||||||||||||||||||||||||| | |||| |||| ||| |||||||     
T  13311822 aaggggtgcccgtctggtttggtcatgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggctg 13311921  T
Q  581 tttaggtgttccttcggtggatcagaggttgcgcggtggtgg 622  Q
    ||| || |||| |||| ||||  |||||||| | ||||||||    
T  13311922 ttttggcgttctttcgatggactagaggttgagaggtggtgg 13311963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 362 - 625
Target Start/End: Complemental strand, 47457233 - 47456976
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagcc--attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtg 459  Q
    ||||||||| ||||||||||||||||| || |||  || | ||||| ||||||||||||||||||||||| |  ||||| |||||||| | ||           
T  47457233 gtcttactttttgtgtgctggattctggtgggccggatac-ttttgattcgagatcgggagttggcgtctggctgcattcttgtttggctagca------ 47457141  T
Q  460 tttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttg 559  Q
     |||||||   ||||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||||| |||||||| ||||| ||||||||||||| | |    
T  47457140 -ttctctggtggatcgggggtaaggggtgcccgtctgattaggtcctgaagtctgatggaccgatcgcttttgatttgagattgggagtcagttctttgg 47457042  T
Q  560 ttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
     || ||||| ||| |||||||||  ||||||| ||||||||  | || |||| | |||||||||||    
T  47457041 ctcaagtttagttatgggcttttatggtgttctttcggtggtccggaagttgtgaggtggtggaag 47456976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 493 - 623
Target Start/End: Original strand, 12480881 - 12481012
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtgttc 591  Q
    |||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||| ||| |||||||||||||    
T  12480881 tctgattttgtcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttttaggtgttc 12480980  T
Q  592 cttcggtggatcagaggttgcgcggtggtgga 623  Q
     |||||||||   ||| ||| |||||||||||    
T  12480981 tttcggtggactggagattgtgcggtggtgga 12481012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 471 - 638
Target Start/End: Original strand, 3478325 - 3478492
Alignment:
Q  471 gatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttgg 570  Q
    |||||||||| |||||||||| |||| |||||| || |||| |||||||||||||  ||||||||||||||||||||| |||||| | | || || || |    
T  3478325 gatcgggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattag 3478424  T
Q  571 ttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||||||||||| | ||||||| ||||||||||| ||| | | | ||||| ||||| ||||||| ||||    
T  3478425 ttttgggctttgttggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatcttt 3478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 401 - 591
Target Start/End: Complemental strand, 11379305 - 11379114
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    ||||| ||| |||||||||||||| ||||||   || | |||||||| || |||| |||||||||||   || || ||||  ||||||||| ||| ||||    
T  11379305 ttttgattcaagatcgggagttggtgtctagctacaatcttgtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttctaattt 11379206  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctttttaggtgttc 591  Q
    |||  || ||||||||| |||||||| ||||||||||||||||||||||||| || | |||| || |||||||||||||||||| |||||||    
T  11379205 ggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagttttggttttgggcttttttggtgttc 11379114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 482 - 638
Target Start/End: Complemental strand, 24324895 - 24324738
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctt 580  Q
    |||||||||| |||||||||||  | |||| ||||||||||||| |||||||||||||||||||||||| |||| | | || || |||||||||||||||    
T  24324895 aggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagttttggttttgggctt 24324796  T
Q  581 tttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    |||| |  ||| || |||||||| ||||| | | ||||||||||| ||||||| ||||    
T  24324795 tttatggtttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatcttt 24324738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 477 - 638
Target Start/End: Original strand, 8745132 - 8745293
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| ||||||| || ||||||||||| || || |||||||||||||||  ||||||||||||||||||| |||||||  | | || |||||||||||||    
T  8745132 gggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttggttttgg 8745231  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    |||||||| |  ||| ||||||||||| ||||| | | ||| ||||||| || |||| ||||    
T  8745232 gctttttatggtttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatcttt 8745293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 498 - 625
Target Start/End: Complemental strand, 9428186 - 9428059
Alignment:
Q  498 tttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcgg 597  Q
    |||||| ||| ||||||||| |||||||  ||||||||||||||| | ||||||||||   ||||||||||||| ||||||| ||| ||||||| |||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttcttcggttctagtttggtcttgggctgttttggtgttctttcgg 9428087  T
Q  598 tggatcagaggttgcgcggtggtggaag 625  Q
    |||| ||||||||| |  ||||||||||    
T  9428086 tggaccagaggttgtgaagtggtggaag 9428059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 472 - 622
Target Start/End: Complemental strand, 42533359 - 42533210
Alignment:
Q  472 atcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggt 571  Q
    ||||||||| ||||||||||  |||||||||| || ||||||||||||| ||||  ||||||||||||||||||||||| | || | | |  |||||||     
T  42533359 atcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtttgg- 42533261  T
Q  572 tttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtgg 622  Q
    ||||||||||||| |  ||| ||||||||||||||||| | | ||||||||    
T  42533260 tttgggctttttatggtttctttcggtggatcagaggtcgtgaggtggtgg 42533210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 457 - 609
Target Start/End: Original strand, 1320753 - 1320906
Alignment:
Q  457 gtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctc 556  Q
    ||||||||||||   ||||||||| |||||||||| | |||||||||  | ||||||||||||||||||  ||||||||| | ||||| ||||||||||     
T  1320753 gtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctt 1320852  T
Q  557 ttgttctag-tttggttttgggctttttaggtgttccttcggtggatcagaggt 609  Q
    | | || || ||||||||||||||||||| |  ||| ||||||||||| |||||    
T  1320853 tggctcaagttttggttttgggctttttatggtttctttcggtggatcggaggt 1320906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 482 - 551
Target Start/End: Original strand, 6584893 - 6584962
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  6584893 aggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 6584962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 625
Target Start/End: Original strand, 36449043 - 36449211
Alignment:
Q  457 gtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctc 556  Q
    |||||||||||   |||||||||| |||||||||| ||||||||| |  |||||||| ||||||  |||| |||| |||||||||  ||||||||||||     
T  36449043 gtgtttctctggtggatcgggggtgaggggtgcccttctgatttgatcttgaagtctagtgggcttatcg-tttttattcgagattaggagtcagttctt 36449141  T
Q  557 ttgttctagtttggttttgggctt-tttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    | |||| ||||  ||||||| ||| ||| ||| ||| ||||||||||| ||||||| | |||||||||||    
T  36449142 tggttcaagttatgttttggacttattttggttttctttcggtggatcggaggttgagaggtggtggaag 36449211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 482 - 603
Target Start/End: Complemental strand, 6716833 - 6716712
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| ||||||||  |  | ||||||||| ||||||||  |||||||||||||||||||||||||||| | | || |||||||| ||||| |||    
T  6716833 aggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggtcttgggtttt 6716734  T
Q  582 ttaggtgttccttcggtggatc 603  Q
    ||| |  ||| |||||||||||    
T  6716733 ttatggtttctttcggtggatc 6716712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 508 - 581
Target Start/End: Original strand, 9349759 - 9349832
Alignment:
Q  508 aagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| |||||||||||    
T  9349759 aagtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 34389939 - 34390015
Alignment:
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    |||||| ||| ||||||  ||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||    
T  34389939 gggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 34390015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 506 - 641
Target Start/End: Complemental strand, 48058727 - 48058592
Alignment:
Q  506 tgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcag 605  Q
    |||||||||||||| |||||| |||||||| |||||||| |||||||| | | | || ||||||||||||| |||||  | ||||| ||||||||    |    
T  48058727 tgaagtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggttttggccttttatgttgttctttcggtggtctgg 48058628  T
Q  606 aggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    |||||| | ||||||||||| ||| ||| |||||||    
T  48058627 aggttgtgaggtggtggaagctgattgatctttaga 48058592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 497 - 583
Target Start/End: Original strand, 23983194 - 23983280
Alignment:
Q  497 atttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttttt 583  Q
    |||||||  |||||||||||||| |||||| ||||||||||||||||||||||| |||  | | || |||||||||||||| |||||    
T  23983194 atttggtcttgaagtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttgggtttttt 23983280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 10244166 - 10244239
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  | |||||||||||||||  ||||||||||||||||||||||||||||    
T  10244166 aggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttct 10244239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 476 - 584
Target Start/End: Complemental strand, 16829039 - 16828930
Alignment:
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggtttt 574  Q
    ||||| |||||||||| ||||||||||| || ||||||||| ||| ||||  ||||| ||||||||||  |||||||||| |   || || |||||||||    
T  16829039 ggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggtttt 16828940  T
Q  575 gggcttttta 584  Q
    ||||||||||    
T  16828939 gggcttttta 16828930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 38306245 - 38306318
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||  |||||||||||||| |||||||||||||    
T  38306245 aggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttct 38306318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 16954637 - 16954740
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctt 580  Q
    |||||||||| ||||||||||| || ||||||||| | ||||||  ||||| ||||||||||  |||||||||| |   || || |||||||||||||||    
T  16954637 aggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttgggctt 16954736  T
Q  581 ttta 584  Q
    ||||    
T  16954737 ttta 16954740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 33435108 - 33435166
Alignment:
Q  497 atttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||| || |||||||||| | |||||  ||||||||||||||||||||||||||||    
T  33435108 atttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttct 33435166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 551
Target Start/End: Complemental strand, 47325955 - 47325913
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  47325955 agtctggtgggccgatcgcttttgatttgagatcgggagtcag 47325913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 1820072 - 1820031
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  1820072 agtctggtggaccgatcgattttgattcgagatagggagtca 1820031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 5860385 - 5860312
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  |||| |||||||| |||| ||||||||||||||||||||||| ||||    
T  5860385 aggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattct 5860312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 535
Target Start/End: Original strand, 44755610 - 44755663
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgatt 535  Q
    |||||||||| ||||||||||| || ||||||||||||||||||  ||||||||    
T  44755610 aggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 609
Target Start/End: Complemental strand, 3419738 - 3419624
Alignment:
Q  497 atttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctt--tttaggtgttcctt 594  Q
    ||||||| || |||| |||||||| ||||  |||||||||||||||||||||||| ||| |   || |||| | ||||||||||  |||  ||| || ||    
T  3419738 atttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggctttgtttctgtgctcttt 3419639  T
Q  595 cggtggatcagaggt 609  Q
    |||||||||||||||    
T  3419638 cggtggatcagaggt 3419624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 551
Target Start/End: Complemental strand, 41089855 - 41089776
Alignment:
Q  472 atcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||  |||||||| |  || ||||||| || ||||||||||| ||||||  |||||||||||||| |||||||||    
T  41089855 atcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcag 41089776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 555
Target Start/End: Original strand, 37795004 - 37795046
Alignment:
Q  513 tggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||| ||  ||||||||||||||||||||||||||||    
T  37795004 tggtgggccgttcagttttgattcgagatcgggagtcagttct 37795046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 547
Target Start/End: Complemental strand, 46262189 - 46262151
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggag 547  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 283 - 785
Target Start/End: Original strand, 4651573 - 4652067
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    ||||||||||||||| |||||||| |||| | |||||||| || ||||||||||| ||||||||||||| |||||||| |||||||||        ||||    
T  4651573 ttttgagggtgtgtgtccttcgagctgagatttttttccttttcgattgatgtttgctccaccgcaagtcacgtcgtctgtcttactt--------ctgg 4651664  T
Q  383 attctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaa 482  Q
    |||||||||  |   | ||||||||||||| | |||||||| ||||||| | ||||||||||| |||||||||||||||||||||    | |||||||||    
T  4651665 attctgatggtcagattattttgcttcgagtttgggagttgacgtctagcgacattattgtttcgttggctacagtgtttctctggtgtaccgggggtaa 4651764  T
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt 582  Q
    ||||||||| ||||| || |||| ||||||||| |||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  4651765 ggggtgcccttctgaatttgttccgaagtctggggggccgatcacttttgattcgagatcgggagtcagt-ctctggttctagtttggttttgggctttt 4651863  T
Q  583 taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgagga 682  Q
    | ||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| || ||||||||||| |||    
T  4651864 ttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatgggga 4651963  T
Q  683 ttgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtcagttt 781  Q
     | |||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||| ||||||| |||||||||| | ||||||||||||||     
T  4651964 cttggttctcttttacaagggtgttcttttgaggtgagttgtggtgacgagtgttttagatgtcgttttttcagtggttggtaactataggagtcagttg 4652063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 283 - 638
Target Start/End: Complemental strand, 50589502 - 50589148
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    ||||||||||||||| | ||| || | |||| || ||||| ||| |||||||||| | ||||||||| | | || ||  ||||||| |||||||||||||    
T  50589502 ttttgagggtgtgtgtcattctagcttagcttttgttccttttttattgatgtttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctgg 50589403  T
Q  383 attctgatgagcca-ttcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggta 481  Q
    |||||| || |||  || |||||||||||||||||||| |||||||||||  || || |||||||| ||||||| ||  |||||||   ||  |||||||    
T  50589402 attctggtgggccggttaattttgcttcgagatcgggacttggcgtctagctgctttcttgtttggctggctacggt--ttctctggtggactgggggta 50589305  T
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| |||| || ||| |||||||| ||||||| ||||| ||||||||||| |||||||| ||||||| | |  | |||||||||||||||||     
T  50589304 aggggtgcccgtctggttgggtcctgaagtccggtgggctgatcgcttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggctta 50589205  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||  |||||| ||||||||| ||||||||| | |||||| |||| ||| ||| ||||    
T  50589204 tttagtgttctttcggtggaccagaggttgtgaggtggtagaagttgattgatcttt 50589148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 577 - 745
Target Start/End: Complemental strand, 35250278 - 35250110
Alignment:
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtga 676  Q
    |||||||||||||||||||||  || |||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||  ||    
T  35250278 gctttttaggtgttccttcggctgaccagaggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggcacattgttgaaga 35250179  T
Q  677 tgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt 745  Q
    |||||| ||| || |||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  35250178 tgaggactggattctcttttacaaggatgttcttttgaggtgagtagtggcgacgagttttatggatgt 35250110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 284 - 555
Target Start/End: Complemental strand, 38545033 - 38544762
Alignment:
Q  284 tttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgga 383  Q
    |||||||||||||| |||||||| |||||  |||||||| |||||||||||||| | ||||||||| | | |||||  ||||||| ||||||||||||||    
T  38545033 tttgagggtgtgtgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctgga 38544934  T
Q  384 ttctgatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaa 482  Q
    ||||  || ||| |||  |||||||||||||| ||||||||| ||||||  ||| | ||||||| |||  |   |||||||||||   ||  |||  | |    
T  38544933 ttctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatga 38544834  T
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||| ||| |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38544833 ggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttct 38544762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 558 - 784
Target Start/End: Complemental strand, 2988141 - 2987912
Alignment:
Q  558 tgttctagtttggttttgggcttttta-ggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcgg 656  Q
    ||||| |||||| |||||||||||||  |||||||||||| | || | ||||||| ||||||||||||| ||||||| |||||| |||| ||||||||||    
T  2988141 tgttcaagtttgattttgggctttttttggtgttccttcgatagaccggaggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcgg 2988042  T
Q  657 aggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt--tgtttttta 754  Q
    | ||||| |  |||||||||||||||   |||| ||||||||||||||||||| | |||||| | ||| | ||||||||||||| ||||  | ||||| |    
T  2988041 atgtggctcggtgttggtgatgaggacatggttctcttttacaagggtgttctttagaggtgcgaagttgcgacgagtgttatgaatgtcatttttttca 2987942  T
Q  755 gtggttggttagtataggagtcagttttag 784  Q
    ||||||||| |||||| |||||||||||||    
T  2987941 gtggttggtaagtatatgagtcagttttag 2987912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 283 - 583
Target Start/End: Original strand, 17033370 - 17033672
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    |||||||||||| || |||||||| |||||  |||||||| |||||||||||||| | ||||| ||| |   |||||  |||||||||||||||||||||    
T  17033370 ttttgagggtgtatgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccacaaatcttgtcgtttgtcttacttattgtgtgctgg 17033469  T
Q  383 attctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggta 481  Q
    |||||| || |||  | | ||||| |||||||||| || |||||||||||  ||| | |||||||| || |||| ||| |||| ||    | || | |||    
T  17033470 attctggtgggccggttacttttgtttcgagatcgagaattggcgtctagttgcaatcttgtttggctgactacggtgattctatggtgaaccgagagta 17033569  T
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctt 580  Q
     ||||||||| ||||||||||| ||  |||||||||||||||||  |||||| ||||||||||||||||||||| | |||| || |||||||||||||||    
T  17033570 gggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggctt 17033669  T
Q  581 ttt 583  Q
    |||    
T  17033670 ttt 17033672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 362 - 641
Target Start/End: Original strand, 19598506 - 19598779
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgt 460  Q
    ||||||||| |||||||||||| |||| || |||  | | ||||||||||||||| | |||||||||||||  ||||| ||| |||| ||   |||        
T  19598506 gtcttactttttgtgtgctggactctggtgggccggttacttttgcttcgagatcagaagttggcgtctagctgcatttttgcttggctg---aca---- 19598598  T
Q  461 ttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgt 560  Q
    |||||||   || || ||||||||||||||| |||| || ||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |       
T  19598599 ttctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgac 19598698  T
Q  561 tctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    || |||||| ||||||| ||||  ||||||| ||||||||  | ||||||| | ||||||||||| ||| ||| |||||||    
T  19598699 tcaagtttgattttgggtttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttaga 19598779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 647 - 785
Target Start/End: Original strand, 11839372 - 11839509
Alignment:
Q  647 agttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgtt 746  Q
    ||||||| ||| ||||| | ||||||| ||||||||||| ||| |||||||||||  |||||| ||| ||||||| ||||  | ||||||||||||||||    
T  11839372 agttctttggatgtggctcgatgttggggatgaggattgagttctcttttacaaga-tgttcttttggggtgagtggtggcaaagagtgttatggatgtt 11839470  T
Q  747 gttttttagtggttggttagtataggagtcagttttagg 785  Q
    ||||||||||||| ||| ||| ||||| |||||||||||    
T  11839471 gttttttagtggtcggtaagtttaggaatcagttttagg 11839509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 517 - 638
Target Start/End: Original strand, 27102210 - 27102331
Alignment:
Q  517 gggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcgg 616  Q
    |||||||||  |||||||||||||||||||||||||||| | | || ||||||||||||||||||||| |  ||| ||||||||||| ||||| | | ||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggctttttacggtttctttcggtggatcggaggtcgagagg 27102309  T
Q  617 tggtggaaggtgaatgaccttt 638  Q
    ||||||||| ||||||| ||||    
T  27102310 tggtggaagctgaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 46814572 - 46814495
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    |||||| |||||||||||  ||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  46814572 cgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 46814495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 472 - 551
Target Start/End: Original strand, 24658903 - 24658982
Alignment:
Q  472 atcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    |||||||| |||||||||||  ||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||||    
T  24658903 atcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcag 24658982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 7857637 - 7857705
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||    
T  7857637 aggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtca 7857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 472 - 555
Target Start/End: Complemental strand, 9313396 - 9313313
Alignment:
Q  472 atcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||| || |||||||||| ||||||||||| || |||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  9313396 atcgggcgtgaggggtgcccttctgatttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttct 9313313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 27031945 - 27031868
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    |||||| |||||||||||  ||||||||||||| |||||| |||||||||||  |||||||||||||||| |||||||    
T  27031945 cgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcag 27031868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 625
Target Start/End: Original strand, 34774847 - 34774998
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctctt-gttctagtttggtt 572  Q
    ||||||| || ||||||| ||||||||||| || | ||||||||| ||||||  |||||| ||||||||||||||||||| | || | || ||||| |||    
T  34774847 cgggggtgagtggtgcccttctgatttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtttttttggctcaagtttagtt 34774945  T
Q  573 ttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    |||||||||||| |  ||| ||||||| ||  ||||||| | |||||||||||    
T  34774946 ttgggctttttatggtttctttcggtgaattggaggttgagaggtggtggaag 34774998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 647 - 783
Target Start/End: Complemental strand, 17994051 - 17993913
Alignment:
Q  647 agttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgtt 746  Q
    ||||||||||| ||||| | |||||||||||||||||||||||  || ||||||||||||||| ||| |||||| ||||  || || |||||||  |||     
T  17994051 agttcttcggatgtggctcgatgttggtgatgaggattgggttccctattacaagggtgttcttttggggtgagcagtgacgatgactgttatgagtgtc 17993952  T
Q  747 gtttttt--agtggttggttagtataggagtcagtttta 783  Q
    |||||||  |||||| ||| ||| ||||| ||| |||||    
T  17993951 gtttttttcagtggtaggtaagtttaggaatcactttta 17993913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 477 - 555
Target Start/End: Complemental strand, 31585862 - 31585784
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||| ||||||||||  || ||||||| ||  |||||||||||||||||  ||||||||||||||||||||||||||||    
T  31585862 gggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 31585784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 477 - 623
Target Start/End: Complemental strand, 32864663 - 32864517
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| |||||||||| || |||||||| || ||| |||||||||| |||  |||| |||||||||||| |||| ||||| |   || |||||||||||||    
T  32864663 gggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgg 32864564  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtgga 623  Q
    |||||||| |  ||| ||  ||||||||||||| | | |||||||||    
T  32864563 gctttttatggtttctttttgtggatcagaggtcgggaggtggtgga 32864517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 638
Target Start/End: Complemental strand, 6583318 - 6583157
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| |||||||||  ||||||||||| || ||||||||||| ||||||  ||||||||||||||||| ||||| |||| | | ||   |||||||||      
T  6583318 gggtgaggggtgcctttctgatttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttggatcagttttggtttttt 6583219  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    |||||||| |  ||| ||||||| ||| ||||| | | ||||||||||| ||| ||| ||||    
T  6583218 gctttttatggtttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatcttt 6583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 41920436 - 41920509
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||  ||||||||||||||||||||||||||||    
T  41920436 aggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 41920509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 633
Target Start/End: Complemental strand, 10785524 - 10785406
Alignment:
Q  514 ggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcg 613  Q
    ||||||||| |  |||||| |||||||||||||||||||| | | | || ||||||||||||||||||||| |  ||  |||||||| || ||||| |||    
T  10785524 ggtgggccggttaattttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggctttttatg-attttttcggtggttcggaggtcgcg 10785426  T
Q  614 cggtggtggaaggtgaatga 633  Q
     ||||||||||| |||||||    
T  10785425 aggtggtggaagctgaatga 10785406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 483 - 597
Target Start/End: Original strand, 42374148 - 42374263
Alignment:
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggcttt 581  Q
    ||||||||| |||||||||||  ||  ||||||||| ||||||| |||||||| ||||||||||||||||  | | |||| || |||||||||||||||     
T  42374148 ggggtgcccttctgatttggtcatgttgtctggtggaccgatcgcttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttg 42374247  T
Q  582 ttaggtgttccttcgg 597  Q
    || || |||| |||||    
T  42374248 tttggcgttctttcgg 42374263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 482 - 625
Target Start/End: Complemental strand, 24684575 - 24684430
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||  || ||||| |||| ||||||||||||||||||  |||| ||||||||||||  ||||||||| |   ||||||| | |||||||||||    
T  24684575 aggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttgactctagttggtttttgggcttt 24684476  T
Q  582 --ttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
      ||  ||| || ||||||||||| ||||| ||| ||| |||||||    
T  24684475 tgttttgtgctctttcggtggatcggaggtcgcgaggttgtggaag 24684430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 30655565 - 30655615
Alignment:
Q  503 ttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  30655565 ttctggagtctagtgggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 581
Target Start/End: Complemental strand, 46692889 - 46692817
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||| | | || |||| | |||||||||||    
T  46692889 agtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggcttt 46692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 482 - 581
Target Start/End: Complemental strand, 5389518 - 5389419
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||  || ||||||| ||  ||||||  |||||||||  |||||||||||||||||||||||||||| |   || |||||| |||||||||||    
T  5389518 aggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggcttt 5389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 655
Target Start/End: Complemental strand, 28395103 - 28395013
Alignment:
Q  566 tttggttttgggctttt-taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcg 655  Q
    ||||||||||||||||| | |||| || || |||||| | ||||||| | | ||||||||||||||||| ||||||| ||| |||||||||    
T  28395103 tttggttttgggcttttattggtgctcttttggtggaccggaggttgtgggttggtggaaggtgaatgatctttagaaaaggagttcttcg 28395013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 5459172 - 5459213
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  5459172 agtctggtgggccgatcacttttgattcgagatcgggagtca 5459213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 553
Target Start/End: Complemental strand, 15840995 - 15840938
Alignment:
Q  496 gatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    |||||| ||||  |||||||||||| ||||  ||||||||||||||||||||||||||    
T  15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtt 15840938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 30686001 - 30685928
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  ||||| |||||||||||  |||||||| |||||||||||||||||||    
T  30686001 aggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttct 30685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 555
Target Start/End: Original strand, 46603334 - 46603449
Alignment:
Q  440 ttgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgag 539  Q
    |||||||| ||| |||| ||||||||||   ||||| | ||  ||| |||||  |||||| |||  || |||||||||||||  ||| ||||||||||||    
T  46603334 ttgtttggctggttacattgtttctctggtggatcgagagtttgggatgccctcctgattaggtcatgtagtctggtgggccattcgcttttgattcgag 46603433  T
Q  540 atcgggagtcagttct 555  Q
    |||| |||||||||||    
T  46603434 atcgagagtcagttct 46603449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 547
Target Start/End: Original strand, 38564912 - 38564950
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggag 547  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  38564912 agtctcgtgggccgatcgcttttgattcgagatcgggag 38564950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 552
Target Start/End: Original strand, 2877634 - 2877691
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagt 552  Q
    |||||||||| |||||| ||||||||||||||  |||||||| |||| ||||| ||||    
T  2877634 tgatttggttttgaagtttggtgggccgatcgcatttgattcaagattgggagccagt 2877691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 583
Target Start/End: Original strand, 16147531 - 16147640
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttt 573  Q
    ||||||| || ||| ||| |||| ||||||  | |||| ||||||| ||||  |||||||||| | |||||||||||||||| | | || |||||| |||    
T  16147531 cgggggtgagaggttcccttctgttttggtcgttaagtatggtgggacgatgaattttgattcaatatcgggagtcagttctttgggtcaagtttgattt 16147630  T
Q  574 tgggcttttt 583  Q
    ||| ||||||    
T  16147631 tggacttttt 16147640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 343 - 786
Target Start/End: Original strand, 31721522 - 31721966
Alignment:
Q  343 accgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattg 442  Q
    ||||||||| |||||||| ||||||||||||||||  |||||||||||| |||  ||||||||||||| |||||||||||||| ||||| ||||||||||    
T  31721522 accgcaagtcacgtcgtctgtcttacttattgtgttatggattctgatgggccggtcattttgcttcgcgatcgggagttggcttctagcggcattattg 31721621  T
Q  443 tttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatc 542  Q
    |||||||||||||  ||||||||||   || |||||||||||||||||| |||||| ||||||||||||||  ||||||||||| |||||||||||||||    
T  31721622 tttggttggctacgatgtttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatc 31721721  T
Q  543 gggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagag 642  Q
    ||||||||||||||| ||||   |||||||||||| | ||| ||||||||||| ||||| | || |||||||||||||||||| ||| ||| ||||||||    
T  31721722 gggagtcagttctctggttcatttttggttttgggttgttttggtgttccttcagtggaccggatgttgcgcggtggtggaagttgattgatctttagag 31721821  T
Q  643 aagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatgga 742  Q
    ||  ||||||| ||| ||||| | |||||||||| ||||| || ||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  31721822 aatgagttctttggatgtggctcgatgttggtgacgaggactgagttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatgga 31721921  T
Q  743 tgttgtttttt-agtggttggttagtataggagtcagttttaggg 786  Q
    ||| ||||||| |||||||||| ||||||||||||||||||||||    
T  31721922 tgtcgttttttcagtggttggtaagtataggagtcagttttaggg 31721966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 611
Target Start/End: Complemental strand, 24072558 - 24072235
Alignment:
Q  288 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 387  Q
    |||||| ||| ||||||||||||||  |||||||||||||||||||||||    ||||| || | | |||||| ||||||| | ||||||||||||||||    
T  24072558 agggtgcgtgtccttcgagttgagcattttttcctatttgattgatgtttttatcaccgtaaatcatgtcgtctgtcttacatgttgtgtgctggattct 24072459  T
Q  388 gatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaagggg 486  Q
      || |||  | | ||||||||| ||||||||||||||||| |||  | | | |||||||| | |||||||||||||||||   || || ||||  ||||    
T  24072458 agtgggccggttacttttgcttcaagatcgggagttggcgtttagctgtaatcttgtttggatagctacagtgtttctctggtggaccgagggtttgggg 24072359  T
Q  487 tgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttagg 586  Q
    ||||| ||||||||||| || ||||||||| ||| ||||| |||||||| |||||||| |||||||||| | |||| || ||| ||| ||| ||||| ||    
T  24072358 tgcccttctgatttggtcctaaagtctggttggctgatcgcttttgatttgagatcggaagtcagttctttggttcaag-ttgatttggggtttttttgg 24072260  T
Q  587 tgttccttcggtggatcagaggttg 611  Q
    ||||| ||||||||| | |||||||    
T  24072259 tgttctttcggtggaccggaggttg 24072235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 355 - 638
Target Start/End: Complemental strand, 39184412 - 39184126
Alignment:
Q  355 gtcgtccgtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggct 453  Q
    |||||| |||||| |||||||||||||||||||| || ||   | | ||||| |||||||||||||||||||||||||  ||| | |||||||||||||     
T  39184412 gtcgtctgtcttatttattgtgtgctggattctggtgggcaggttacttttgattcgagatcgggagttggcgtctagttgcaatcttgtttggttggcg 39184313  T
Q  454 acagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||||||||||    | ||  |||  ||||||||| ||||||||| |  ||  ||||||||||||||||  ||||||||||||||||| ||||||||    
T  39184312 acagtgtttctctggtgaaccgacggtttggggtgcccttctgatttgatcatgtggtctggtgggccgatcacttttgattcgagatcggaagtcagtt 39184213  T
Q  554 ctcttgttctag--tttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    || | |||| ||  |||||||||| ||||||| ||||||| ||||||||| ||||||||| | ||| ||||||| ||| ||| ||||    
T  39184212 ctttggttcaagcatttggttttgagcttttttggtgttctttcggtggaccagaggttgtgaggtagtggaagctgattgatcttt 39184126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 362 - 600
Target Start/End: Original strand, 27712939 - 27713171
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgt 460  Q
    ||||||||| |||||||||||||||||||| |||  | | |||||||||||| ||||||||||||||||||| ||||| |||||||||||||            
T  27712939 gtcttactttttgtgtgctggattctgatgggccggttacttttgcttcgaggtcgggagttggcgtctagatgcattcttgtttggttggca------- 27713031  T
Q  461 ttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgt 560  Q
    |||||||   ||  |||| |||||| ||||| |||| || ||| ||||||||| |||||||||||| ||||||||||||||||||| |||||||| | |     
T  27713032 ttctctggtggactggggataagggttgcccgtctggttgggtcctgaagtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggc 27713131  T
Q  561 tctagtttggttttgggctttttaggtgttccttcggtgg 600  Q
    || |||||||||||||||||||  | ||||| ||||||||    
T  27713132 tcaagtttggttttgggcttttatgttgttctttcggtgg 27713171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 288 - 625
Target Start/End: Original strand, 8730706 - 8731045
Alignment:
Q  288 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 387  Q
    |||||| ||| |||| ||| |||||| |||||||| |||||||||||||| | |||||| || |   || ||| ||||||||||||||||||||||||||    
T  8730706 agggtgagtgtccttagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattct 8730805  T
Q  388 gatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaagggg 486  Q
    | || ||| |||  ||||||||||||||| | |||||| ||||||   |  | |  ||| | ||||||| ||||| || ||   ||  | || |||||||    
T  8730806 ggtgggccgattacttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataagggg 8730905  T
Q  487 tgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagttt-ggttttgggctttttag 585  Q
    ||||| | |||||||||  || |||||||||| || |||| |||| ||||||||||||||||||||||| | ||||  |||| ||||||||||||||| |    
T  8730906 tgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttg 8731005  T
Q  586 gtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    |||||| |||| |||| |  |||||  | |||||||||||    
T  8731006 gtgttctttcgatggaccgaaggttcagaggtggtggaag 8731045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 484 - 782
Target Start/End: Complemental strand, 39024545 - 39024238
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttt-------tgg 576  Q
    |||||||| ||||| ||||| ||||||| ||||||  | |||| ||||||||||||||||||||||| |||| | |||| ||||||||||       |||    
T  39024545 gggtgcccttctgagttggtcctgaagtttggtggctcaatcgcttttgattcgagatcgggagtcacttctttggttcaagtttggttttgggttttgg 39024446  T
Q  577 gcttttta-ggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtg 675  Q
    | |||||| ||||||| ||||||||||  || |||| | ||||||||||  ||||||| || |||| ||| ||| |||| || ||||   |   ||||||    
T  39024445 gttttttatggtgttctttcggtggattggaagttgagaggtggtggaacttgaatgatctgtagaaaaggagtccttccgatgtggtttagatttggtg 39024346  T
Q  676 atgaggattgggt-tatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagtataggag 774  Q
    ||||||| |||||   ||||||||||||||||||| ||  |||||||||||  || ||||||||||||| | |||||| | |||| |||||||||| |||    
T  39024345 atgaggactgggtgcttcttttacaagggtgttcttttagggtgagtagtgacgatgagtgttatggatatcgtttttcaatggtcggttagtataagag 39024246  T
Q  775 tcagtttt 782  Q
    ||| ||||    
T  39024245 tcaatttt 39024238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 501 - 641
Target Start/End: Complemental strand, 22675402 - 22675262
Alignment:
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtgg 600  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||   ||||||| ||| ||||    
T  22675402 ggttctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggctttaatggtgttctttcagtgg 22675303  T
Q  601 atcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
      | ||||||| | ||||||||||| ||| ||| |||||||    
T  22675302 tccggaggttgtgaggtggtggaagttgattgatctttaga 22675262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 401 - 555
Target Start/End: Complemental strand, 7392209 - 7392055
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||||||||||||| ||||||  ||| | |||||||| | | |   ||||||||||||   | || |||| |||||||||| ||||||||    
T  7392209 ttttgcttcgagatcgggagttggtgtctagctgcaatcttgtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgattt 7392110  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||| || ||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  7392109 ggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttct 7392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 323 - 641
Target Start/End: Complemental strand, 17854326 - 17854004
Alignment:
Q  323 atttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattca--ttttgcttcgagatcgggag 420  Q
    ||||||||||||||| | |||| |||| | | ||||   |||||||  |||||||||||||||||| || |||||| |  |||||||| |||||||||||    
T  17854326 atttgattgatgtttgcgccactgcaactcatgtcgattgtcttacaaattgtgtgctggattctggtgggccatttactttttgctttgagatcgggag 17854227  T
Q  421 ttggcgtctagaggcattattgttt-ggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtggg 519  Q
    ||||  |||||   || | |||||| || ||||||  ||||| |||||   || ||||||| |||||||||| ||| |||||||  |||||| |||||||    
T  17854226 ttggtctctagctacaatcttgttttggctggctagggtgttcctctggtggaccgggggtgaggggtgcccttctaatttggtcttgaagtatggtggg 17854127  T
Q  520 ccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctt-tttaggtgttccttcggtggatcagaggttgcgcggtg 618  Q
    |||| || |||||| |||||||||||||||| || | | |||| ||||    ||||||||| |||   ||||| ||||||||| | || |||| | ||||    
T  17854126 ccgaccgcttttgactcgagatcgggagtcaattatttggttcaagttctactttgggcttattttaatgttctttcggtggacctgaagttgagaggtg 17854027  T
Q  619 gtggaaggtgaatgacctttaga 641  Q
    ||||||| ||||||| |||||||    
T  17854026 gtggaagttgaatgatctttaga 17854004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 477 - 632
Target Start/End: Original strand, 8297447 - 8297602
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| |||||||||| |||||||||||||| |||  ||||||||  ||   |||||||||||||||||||||||||||| | | || |||||||||||||    
T  8297447 gggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 8297546  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatg 632  Q
     ||||||| |  ||| ||||||| ||| ||||| | | ||||||||||| ||||||    
T  8297547 actttttatggtttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatg 8297602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 493 - 624
Target Start/End: Complemental strand, 13954320 - 13954189
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttcc 592  Q
    ||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||| | || | | || ||||||||||||||||||||| |  |||     
T  13954320 tctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggctttttatggtttct 13954221  T
Q  593 ttcggtggatcagaggttgcgcggtggtggaa 624  Q
    ||||||||||| || ||||   ||||||||||    
T  13954220 ttcggtggatcggaagttgaaaggtggtggaa 13954189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 609
Target Start/End: Complemental strand, 33258979 - 33258852
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||| || |||| |||||| || ||||||||||||||||||  ||||||||||||||| ||||| |||||| | |||| || |||| ||||||||||    
T  33258979 aggggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctttggttcgaggttggatttgggcttt 33258880  T
Q  582 ttaggtgttccttcggtggatcagaggt 609  Q
    ||| |  ||| ||||||||||| |||||    
T  33258879 ttatggtttctttcggtggatcggaggt 33258852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 472 - 638
Target Start/End: Complemental strand, 14302537 - 14302371
Alignment:
Q  472 atcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggt 571  Q
    |||| |||| |||| ||||| |||| |||||| || ||||||||||| | ||||  ||||| |||||||| ||||||||||||| | |  | ||||||||    
T  14302537 atcgagggtgagggatgcccttctgttttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttggt 14302438  T
Q  572 tttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||||||||||||| |  ||| ||||||||||| ||||| | | ||||||||||| || |||| ||||    
T  14302437 tttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatcttt 14302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 498 - 609
Target Start/End: Original strand, 25992007 - 25992118
Alignment:
Q  498 tttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcgg 597  Q
    |||||| || |||||||||||||| |||| |||||||||||||||| ||||||||||| | | || || |||||||||||||||||| |  ||| ||||     
T  25992007 tttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggctttttatgatttctttcga 25992106  T
Q  598 tggatcagaggt 609  Q
    |||||| |||||    
T  25992107 tggatcggaggt 25992118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 474 - 555
Target Start/End: Original strand, 34378074 - 34378155
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||| |||| ||||||  || ||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  34378074 cgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 34378155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 477 - 555
Target Start/End: Complemental strand, 7195341 - 7195263
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||| |||||||||| ||||||||||   | |||||||||| |||||||  ||||||||||||||||||||||||||||    
T  7195341 gggtgaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttct 7195263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 714 - 781
Target Start/End: Original strand, 36979123 - 36979191
Alignment:
Q  714 aggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtcagttt 781  Q
    ||||||||||||| ||| |||||| ||||||||||||||| |||||||||| |||||| ||||||||||    
T  36979123 aggtgagtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagttt 36979191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 638
Target Start/End: Complemental strand, 21402903 - 21402778
Alignment:
Q  513 tggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgc 612  Q
    |||||||||||||  ||||  |||||||||||||||||||||| |   ||  ||||||||||| |||||||| |  ||| ||||||||||  |||||||     
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactcaggtttggttttgagctttttatggtttctttcggtggattggaggttga 21402804  T
Q  613 gcggtggtggaaggtgaatgaccttt 638  Q
    | ||||||||||| ||| ||| ||||    
T  21402803 gaggtggtggaagttgattgatcttt 21402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 23426339 - 23426401
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||| |||||| |||||||||||||| |||| |  |||||||||||||| |||||||||||||    
T  23426339 tctggtttggtcctgaagtctggtggaccgaacacttttgattcgagattgggagtcagttct 23426401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 753
Target Start/End: Original strand, 31742359 - 31742421
Alignment:
Q  691 tcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt 753  Q
    ||||||||||||||||||| ||| |||||||||||| || | ||||||||||| | |||||||    
T  31742359 tcttttacaagggtgttcttttggggtgagtagtggcgatgggtgttatggatatcgtttttt 31742421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 498 - 555
Target Start/End: Original strand, 29087481 - 29087538
Alignment:
Q  498 tttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||| ||||||||||| | ||||  ||||||||||||||| ||||||||||||    
T  29087481 tttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttct 29087538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 698345 - 698413
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    ||||||||||  || ||||||| ||  |||||||||| ||||||  |||||||||||||||||||||||    
T  698345 aggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtca 698413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 551
Target Start/End: Original strand, 12046252 - 12046308
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||| ||| ||||| |||||||||||||  ||||||||||||||||||| ||||    
T  12046252 tgatttgattcggaagtttggtgggccgatcacttttgattcgagatcgggactcag 12046308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 717 - 778
Target Start/End: Original strand, 24436031 - 24436095
Alignment:
Q  717 tgagtagtggtgacgagtgttatggatgttgtttttt---agtggttggttagtataggagtcag 778  Q
    |||||||||| |||||||||||| ||||| |||||||   |||||||||| ||| ||||||||||    
T  24436031 tgagtagtggcgacgagtgttatagatgtcgttttttttcagtggttggtaagtttaggagtcag 24436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 26046045 - 26045959
Alignment:
Q  498 tttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttttta 584  Q
    |||||| || ||||||||||  ||||||  ||||||||||||||||||||| |||  | | | || ||||||||||||| |||||||    
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttggacttttta 26045959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 22675530 - 22675461
Alignment:
Q  363 tcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctag 431  Q
    |||||||| ||||||| ||||||||| || |||  | | ||||||||||||| |||||||||||||||||    
T  22675530 tcttactttttgtgtgttggattctggtgggccggttacttttgcttcgagaccgggagttggcgtctag 22675461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 362 - 787
Target Start/End: Original strand, 18680929 - 18681358
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtt 461  Q
    ||||||||||||||||| |||||||||||| | || ||  |||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  18680929 gtcttacttattgtgtgttggattctgatgggtcaatccatttgcttcgagatcgggagttggcgtctagcggcgttattgtttggttgactacggtgtt 18681028  T
Q  462 tctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgtt 561  Q
    |||||    || |||||||||||  ||||| |||||||||||| |||||| |||||||||||| |  ||||||||||||||||||||||||||||| |||    
T  18681029 tctctagtggaccgggggtaaggactgcccttctgatttggttatgaagtatggtgggccgattgcatttgattcgagatcgggagtcagttctctggtt 18681128  T
Q  562 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtg 661  Q
    | |||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||||| || |||||||| |||    
T  18681129 caagtttggttttgggcttttgtggtgttcctttggtggatcagaggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtg 18681228  T
Q  662 gcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt----tgttttttagtg 757  Q
    || |||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||    | ||||||||||    
T  18681229 gctcaatgttggtgatgaggactaggttctcttttacaagggtgttcttttgaggtgagtggtggcgacgagtgttttggatgtcgtgttttttttagtg 18681328  T
Q  758 gttggttagtataggagtcagttttagggg 787  Q
    |||||| |||||||||||||||||||||||    
T  18681329 gttggtaagtataggagtcagttttagggg 18681358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 277 - 783
Target Start/End: Complemental strand, 31902715 - 31902216
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgttta-ctccaccgcaagttacgtcgtccgtcttacttattgt 375  Q
    ||||| ||||||||||||||  |||||||| |||||| ||||||||  ||||||| |||||  ||| ||| | ||| |||| ||| ||||| ||||| ||    
T  31902715 agggtgttttgagggtgtgtctccttcgagctgagctttttttcct--ttgattgttgttttgctctaccactagtcacgtggtcggtcttgcttatagt 31902618  T
Q  376 gtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcg 475  Q
    ||||||||||||||||||||  ||||||| ||||||| |||||||||||||| |||||||||||| || ||||||||| | || ||||||||   || ||    
T  31902617 gtgctggattctgatgagccgatcattttccttcgaggtcgggagttggcgtttagaggcattatggtgtggttggcttcggtatttctctggtggaccg 31902518  T
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttg 575  Q
    ||||| ||||||| || ||| ||||| | ||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  31902517 ggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctggttcaagtttggttttg 31902418  T
Q  576 ggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtg 675  Q
     |||| || | |||||||| |||||| | ||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||||| ||| | || ||||||||    
T  31902417 agcttatttgatgttcctttggtggaccggaggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgactcagtgttggtg 31902318  T
Q  676 atgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggag 774  Q
     |||||| | |||| |||||||||| |||||||      ||| |||||||| ||||||||||   ||||| ||||||| | |||||||||||||||||||    
T  31902317 ttgaggacttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcagatgtcgttttttcactggttggttagtataggag 31902225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 318 - 601
Target Start/End: Original strand, 4471743 - 4472026
Alignment:
Q  318 ttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcg 416  Q
    ||||| |||||||||||||| | ||||||||| ||  |||||| ||||||||||||||||| ||||||||| || |||  | | ||||||||| ||||||    
T  4471743 ttcctttttgattgatgtttgcaccaccgcaaattttgtcgtcagtcttacttattgtgtgatggattctggtgggccggttacttttgcttcaagatcg 4471842  T
Q  417 ggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggt 516  Q
    ||||||||||||||    | ||||||||||| || ||||||||||||||||   || ||||||||||||| |||| |||| |||||| ||| ||||||||    
T  4471843 ggagttggcgtctatctactttattgtttggctgactacagtgtttctctggtggaccgggggtaagggg-gcccgtctggtttggtcctggagtctggt 4471941  T
Q  517 gggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtgga 601  Q
    ||||||||||  ||||||||||||||||||||||||||| |  ||| |||||| ||||||||||| | ||||||| || ||||||    
T  4471942 gggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctttattggtgttcttttggtgga 4472026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 562 - 778
Target Start/End: Complemental strand, 12793747 - 12793530
Alignment:
Q  562 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtg 661  Q
    |||||||||||||||||||||  |||||||||||| |||| | ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||    
T  12793747 ctagtttggttttgggcttttatggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtg 12793649  T
Q  662 gcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttg--ttttttagtggt 759  Q
    || |  ||||||||||||| | |  ||| |||||||||| |||||||| ||||||||||||||||||||||||| |||  |||| |  |||||||||||     
T  12793648 gctcggtgttggtgatgagaagtaagttctcttttacaaaggtgttcttttgaggtgagtagtggtgacgagtgatatttatgtcgctttttttagtggc 12793549  T
Q  760 tggttagtataggagtcag 778  Q
    ||||||| |||||||||||    
T  12793548 tggttagcataggagtcag 12793530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 287 - 625
Target Start/End: Complemental strand, 22885425 - 22885087
Alignment:
Q  287 gagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattc 386  Q
    ||||||| ||| ||||||||||||||   ||||||| |||||||||||||| | ||| ||||| | | ||| || |  |||| | ||||||| ||||| |    
T  22885425 gagggtgcgtgtccttcgagttgagcgtcttttcctttttgattgatgtttgcaccatcgcaattcatgtcttctgctttacattttgtgtgttggatgc 22885326  T
Q  387 tgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggg 485  Q
    || || |||  | | |||||||||||||||||||||||| ||||||  || |  ||||||||  |||||| ||||| |||||   ||| |||||| ||||    
T  22885325 tggtgggccggttacttttgcttcgagatcgggagttggtgtctagctgcttccttgtttggcgggctacggtgttgctctggtggattgggggttaggg 22885226  T
Q  486 gtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttag 585  Q
    ||||||  ||| |||| | |||||||||||||||||||||  |||||||||||||||||||||||||||| | |||| |||||||||||||| | ||| |    
T  22885225 gtgcccg-ctggtttgatcctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggttgttttg 22885127  T
Q  586 gtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    |||||| ||||||||| ||||||||| | |||||||||||    
T  22885126 gtgttctttcggtggaccagaggttgagaggtggtggaag 22885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 363 - 624
Target Start/End: Complemental strand, 15126620 - 15126365
Alignment:
Q  363 tcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtt 461  Q
    |||||||| ||||||||| ||||||| || | || | | |||||||||||||||||||||||||||||||  ||||| ||||||||||| ||       |    
T  15126620 tcttactttttgtgtgctagattctggtgggtcagttacttttgcttcgagatcgggagttggcgtctagctgcattcttgtttggttgtct-------t 15126528  T
Q  462 tctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgtt 561  Q
    ||||||   || |||||||||||||| ||| |||  || ||| |||||||||||||||||||||  |||||||||||||||||||||| ||||| | | |    
T  15126527 tctctggtggaccgggggtaaggggttcccgtctcgttgggtcctgaagtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggct 15126428  T
Q  562 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaa 624  Q
    |  ||||||||||||||||||  ||||||| ||||||||  | ||||||| | ||||||||||    
T  15126427 catgtttggttttgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaa 15126365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 668 - 785
Target Start/End: Original strand, 9926384 - 9926500
Alignment:
Q  668 tgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagt 767  Q
    ||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||| | ||||| |||||| ||| |||    
T  9926384 tgttggtgatgaggactgggttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatg-tctttttcagtggtcggtaagt 9926482  T
Q  768 ataggagtcagttttagg 785  Q
    ||||||||||||||||||    
T  9926483 ataggagtcagttttagg 9926500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 288 - 624
Target Start/End: Original strand, 27739766 - 27740101
Alignment:
Q  288 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 387  Q
    ||||||||||  |||||||||||||| |||||||| |||||||||||||| | |||| | || | | || |||  | || | |||||| |||||||||||    
T  27739766 agggtgtgtgttcttcgagttgagctttttttcctttttgattgatgtttgcaccactgtaattcatgttgtctatttt-catattgtatgctggattct 27739864  T
Q  388 gatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaagggg 486  Q
    |  | ||| ||| |||| |||||||||||||||||| | ||||||  || ||  |||||||  | |||| || ||||||||   ||  |||||| |||||    
T  27739865 ggcgggccgattaatttcgcttcgagatcgggagttagtgtctagctgctttcatgtttggcggactacggt-tttctctggtggactgggggttagggg 27739963  T
Q  487 tgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttagg 586  Q
    ||||| ||||  ||||| |||||||||||||||||||||| ||||||||| |||||| ||||||||  |   |||| |||||||| ||||| | ||| ||    
T  27739964 tgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttgggttgttttgg 27740063  T
Q  587 tgttccttcggtggatcagaggttgcgcggtggtggaa 624  Q
    ||||| ||||||||| ||||||||| | ||||||||||    
T  27740064 tgttctttcggtggaccagaggttgagaggtggtggaa 27740101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 475 - 625
Target Start/End: Original strand, 16959959 - 16960109
Alignment:
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt 574  Q
    ||||||||||||||||| | || |  ||| || ||||||||||||||||||| |||||||||||||||| ||||||||||| | | || |||||||||||    
T  16959959 gggggtaaggggtgcccgtttggtagggtcctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggtttt 16960058  T
Q  575 gggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    |||||| || ||||||| ||||||||| ||||||||| | | |||||||||    
T  16960059 gggcttatttggtgttctttcggtggaccagaggttgtgagctggtggaag 16960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 25505201 - 25504886
Alignment:
Q  288 agggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattct 387  Q
    |||||| ||| |||| ||| |||||| |||||||| |||||||||||||| | |||||| || |   || ||| ||||||||||||||||||||||||||    
T  25505201 agggtgagtgtccttagagctgagctttttttcctttttgattgatgtttgccccaccgtaaatctggttgtctgtcttacttattgtgtgctggattct 25505102  T
Q  388 gatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaagggg 486  Q
    | || ||| |||  ||||||||||||||| | |||||| ||||||   |  | |  ||| | ||||||| ||||| || ||   ||  | || |||||||    
T  25505101 ggtgggccgattacttttgcttcgagatcagaagttggtgtctagctactatctgattttgctggctacggtgttcctatggtggactgaggataagggg 25505002  T
Q  487 tgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctttttag 585  Q
    ||||| | |||||||||  || |||||||||| || |||| |||| ||||||||||||||||||||||| | ||||  | |||||||||||||||||| |    
T  25505001 tgcccttatgatttggtcttgcagtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttg 25504902  T
Q  586 gtgttccttcggtgga 601  Q
    |||||| |||| ||||    
T  25504901 gtgttctttcgatgga 25504886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 507 - 704
Target Start/End: Complemental strand, 915524 - 915328
Alignment:
Q  507 gaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg-gctttttaggtgttccttcggtggatcag 605  Q
    ||||| |||||||| ||||| ||||||||||||||||  |||||||| | |  ||| ||||||||||||| ||||||||| | ||| ||||||| | | |    
T  915524 gaagtatggtgggctgatcgcttttgattcgagatcgaaagtcagtttt-tgattcaagtttggttttggagctttttag-tattctttcggtgcaccgg 915427  T
Q  606 aggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggt 704  Q
    |||||||||||||||||||| | |||||  || ||| ||| ||||||||||| || || || |||||||||||||||||||||| ||| ||||||||||    
T  915426 aggttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattacaagggt 915328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 505 - 625
Target Start/End: Complemental strand, 33788706 - 33788586
Alignment:
Q  505 ctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatca 604  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| | ||||  |||||| |||||| | ||| ||||||| ||||||| | ||    
T  33788706 ctgaagtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggtttggctttgggttgttttggtgttctttcggtgaacca 33788607  T
Q  605 gaggttgcgcggtggtggaag 625  Q
    ||||||| | |||||||||||    
T  33788606 gaggttgagaggtggtggaag 33788586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 624
Target Start/End: Original strand, 2062901 - 2063015
Alignment:
Q  510 gtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggt 609  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||| | | || |||||||||||||||||||| ||||||| ||||||| | |||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 2063000  T
Q  610 tgcgcggtggtggaa 624  Q
    || | ||| ||||||    
T  2063001 tgtgaggttgtggaa 2063015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 482 - 631
Target Start/End: Original strand, 1269467 - 1269616
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| |||||||| || || ||||||||||||||||||  ||||||||||||||||| |||||||||| | | || |||||||||||||| |||    
T  1269467 aggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattt 1269566  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaat 631  Q
    ||| |  ||| ||| ||||||| ||||| | | | ||||||||| |||||    
T  1269567 ttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaat 1269616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 325 - 625
Target Start/End: Original strand, 29486957 - 29487258
Alignment:
Q  325 ttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagcca--ttcattttgcttcgagatcgggagtt 422  Q
    ||||||||||||| | ||||||||| | | || ||| || |||||| |||||||||||||||||| | | |   ||  ||||||||||||||||||||||    
T  29486957 ttgattgatgtttgcaccaccgcaattcatgttgtctgttttacttgttgtgtgctggattctgacggggccggttacttttgcttcgagatcgggagtt 29487056  T
Q  423 ggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccg 522  Q
    || ||||||  || || |||| |||  |||| | |||||||||||   ||  |||||| |||||||||| |||| |||| |  ||||||||||| ||||     
T  29487057 ggtgtctagctgctttcttgtctggcgggct-cggtgtttctctggtggactgggggttaggggtgcccgtctggtttgatcttgaagtctggt-ggcca 29487154  T
Q  523 atcgattttgattcgagatcgggagtcagttctcttgttctagtttgg-ttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtg 621  Q
    |||| |||||||||||||| |  ||||||||||   ||||  |||||| ||||||||| ||  | ||||| |||||| || ||||||||| | |||||||    
T  29487155 atcgcttttgattcgagattgatagtcagttcttcggttcatgtttggtttttgggctgttatgatgttctttcggttgaccagaggttgtgtggtggtg 29487254  T
Q  622 gaag 625  Q
    ||||    
T  29487255 gaag 29487258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 638
Target Start/End: Complemental strand, 10173659 - 10173518
Alignment:
Q  498 tttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt-taggtgttccttcg 596  Q
    |||||| || |||||| |||||||||||  ||||||||||||||||| ||| |||| | | | || ||||||||||||||||||| | ||||||| ||||    
T  10173659 tttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttgttggtgttctttcg 10173560  T
Q  597 gtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| ||| ||||| | | ||||||||||| ||||||| ||||    
T  10173559 gtgaatcggaggtcgagaggtggtggaagttgaatgatcttt 10173518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 14405195 - 14405282
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt 582  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||| | | || |||| | ||||||||||||    
T  14405195 tgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggctttt 14405282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 625
Target Start/End: Complemental strand, 16952443 - 16952336
Alignment:
Q  519 gccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttgcgcggt 617  Q
    |||||||  |||||||||||||||||||| ||||||| | | || ||||||||||||| | ||||| ||||||| ||||||||||| ||||||| | |||    
T  16952443 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggt 16952344  T
Q  618 ggtggaag 625  Q
    ||||||||    
T  16952343 ggtggaag 16952336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 625
Target Start/End: Complemental strand, 17023108 - 17023001
Alignment:
Q  519 gccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttgcgcggt 617  Q
    |||||||  |||||||||||||||||||| ||||||| | | || ||||||||||||| | ||||| ||||||| ||||||||||| ||||||| | |||    
T  17023108 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggt 17023009  T
Q  618 ggtggaag 625  Q
    ||||||||    
T  17023008 ggtggaag 17023001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 625
Target Start/End: Complemental strand, 17060414 - 17060307
Alignment:
Q  519 gccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttgcgcggt 617  Q
    |||||||  |||||||||||||||||||| ||||||| | | || ||||||||||||| | ||||| ||||||| ||||||||||| ||||||| | |||    
T  17060414 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggt 17060315  T
Q  618 ggtggaag 625  Q
    ||||||||    
T  17060314 ggtggaag 17060307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 638
Target Start/End: Original strand, 34230219 - 34230341
Alignment:
Q  516 tgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcg 615  Q
    ||||||||||  |||| |||||||||| |||||||||||| | | || |||||| |||||||||||||  |  ||| ||||||||||| ||||||| | |    
T  34230219 tgggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggtttctttcggtggatcggaggttgagag 34230318  T
Q  616 gtggtggaaggtgaatgaccttt 638  Q
    |||||||||| ||||||| ||||    
T  34230319 gtggtggaagctgaatgatcttt 34230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 482 - 555
Target Start/End: Complemental strand, 39338962 - 39338889
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| ||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  39338962 aggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttct 39338889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 401 - 541
Target Start/End: Original strand, 14566350 - 14566489
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||||| ||||||| ||||||  || || |||||||    ||||| |||||||||||   || | ||||| |||||||||| |||| |||    
T  14566350 ttttgcttcgagatcgagagttggtgtctagctgcttttttgtttgacgagctacggtgtttctctggtgga-ctggggttaggggtgcccgtctggttt 14566448  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagat 541  Q
    ||| |||||||||| |||| ||||||||| |||||||||||    
T  14566449 ggtcctgaagtctgatggggcgatcgattctgattcgagat 14566489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 7874277 - 7874344
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||  ||||||||||||| |||||||||||| |||||  ||||||||||||||||||||||||    
T  7874277 gggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcag 7874344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 551
Target Start/End: Complemental strand, 14106621 - 14106552
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||||  |||||||||| || ||||||||||||||||||  ||||||||| ||||||||||||||    
T  14106621 aggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcag 14106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 611
Target Start/End: Original strand, 17079190 - 17079283
Alignment:
Q  519 gccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttg 611  Q
    |||||||  |||||||||||||||||||| ||||||| | | || ||||||||||||| | ||||| ||||||| ||||||||||| |||||||    
T  17079190 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttg 17079283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 638
Target Start/End: Complemental strand, 37770743 - 37770583
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| |||||||||| ||||||||||| || | || |||||||||||||  |||||||||  |||| ||||||| |||| | | || | |||||||||||    
T  37770743 gggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattctttagatcaattttggttttgg 37770644  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||||||  ||| ||| ||||||| ||| ||||| | | |||| |||||| ||||||| ||||    
T  37770643 gcttttatggt-ttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatcttt 37770583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 520 - 610
Target Start/End: Original strand, 3745356 - 3745447
Alignment:
Q  520 ccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt-gggctttttaggtgttccttcggtggatcagaggtt 610  Q
    ||||||| |||| |||||||||||| |||||||||| | |||  ||||| ||||| ||||||||| | ||||| ||||||||||||||||||    
T  3745356 ccgatcgcttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtt 3745447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 23650384 - 23650442
Alignment:
Q  497 atttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  |||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttct 23650442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 455
Target Start/End: Original strand, 2062701 - 2062865
Alignment:
Q  287 gagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattc 386  Q
    ||||||| ||| ||||||||||||||  || ||||| |||||||||||||| |   ||||||| | | |||||      ||| || |||||||||||| |    
T  2062701 gagggtgcgtgtccttcgagttgagcatttgttcctttttgattgatgtttgcattaccgcaaatcatgtcgta-----tacatagtgtgtgctggatgc 2062795  T
Q  387 tgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctac 455  Q
    || || |||| | | |||||||||||||||||||||||| ||||||  ||||| |||||||| |||||||    
T  2062796 tggtgggccaattacttttgcttcgagatcgggagttggtgtctagctgcattcttgtttggctggctac 2062865  T

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Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 599
Target Start/End: Complemental strand, 27880189 - 27880110
Alignment:
Q  519 gccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtg 599  Q
    |||||||||||||||||||||||||| |||||||| | | |||| ||||||| |||||||| ||| | ||||| |||||||    
T  27880189 gccgatcgattttgattcgagatcggaagtcagttatttggttcaagtttgg-tttgggctgttttgttgttctttcggtg 27880110  T

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Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 550
Target Start/End: Complemental strand, 36276256 - 36276200
Alignment:
Q  494 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    ||||||||||| || |||||||||||| | ||| |||||||||||||||||||||||    
T  36276256 ctgatttggttatggagtctggtgggctgttcgcttttgattcgagatcgggagtca 36276200  T

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Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 638
Target Start/End: Original strand, 7695993 - 7696102
Alignment:
Q  528 ttttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggt 627  Q
    ||||||||||| | |||||||||||||| | | || |||| ||||||||||||||  ||| ||| |||||||||||  |||| | | ||||||||||| |    
T  7695993 ttttgattcgataccgggagtcagttctttggctcaagttaggttttgggcttttacggt-ttctttcggtggatcgaaggtcgggaggtggtggaagct 7696091  T
Q  628 gaatgaccttt 638  Q
    |||||| ||||    
T  7696092 gaatgatcttt 7696102  T

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Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 387157 - 387230
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| || ||||||||||||| ||||  |||||||| |||||||||||||| ||||    
T  387157 aggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattct 387230  T

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Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 550
Target Start/End: Original strand, 10524108 - 10524149
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  10524108 agtctggtgggccgatcacttttgattcgagatcgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 750
Target Start/End: Complemental strand, 29044760 - 29044684
Alignment:
Q  675 gatgaggattgggttatcttttacaagggtgttctctt-gaggtgagtagtggtgacgagtgttatggatgttgttt 750  Q
    |||||||| |||||| ||| ||||||||||||||| || |||||||||||||  || | ||||||||||||| ||||    
T  29044760 gatgaggactgggttttctgttacaagggtgttcttttggaggtgagtagtgacgatgggtgttatggatgtcgttt 29044684  T

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Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 638
Target Start/End: Complemental strand, 41086813 - 41086738
Alignment:
Q  563 tagtttggttttgggctttttaggtgttcctt-cggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    |||||||||||||||||||||| | ||||||| ||||||||| ||||| | | ||||||||||| ||||||| ||||    
T  41086813 tagtttggttttgggctttttatg-gttcctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 41086738  T

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Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 602
Target Start/End: Original strand, 13337259 - 13337378
Alignment:
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt 582  Q
    ||||||||| |||||||||    | ||||||| ||||||||||  ||||||||||| ||||| |||||||||| |   || |||| |||||||| |||||    
T  13337259 ggggtgcccttctgatttgaccttaaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttggactttt 13337358  T
Q  583 taggtgttccttcggtggat 602  Q
    || |  ||| ||||||||||    
T  13337359 tatggtttctttcggtggat 13337378  T

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Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 3745227 - 3745293
Alignment:
Q  366 tacttattgtgtgctggattctgatgagcc-attcattttgcttcgagatcgggagttggcgtctag 431  Q
    ||||||||||||||||||||||| || |||  ||  |||| ||| ||||||||||||||||||||||    
T  3745227 tacttattgtgtgctggattctggtgggccggttacttttactttgagatcgggagttggcgtctag 3745293  T

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Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 547
Target Start/End: Complemental strand, 4162090 - 4162052
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggag 547  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

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Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 16959818 - 16959916
Alignment:
Q  290 ggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 388  Q
    |||||||| | ||| || |||||| || ||||| |||||||||| ||| | ||||||||| | | || ||  ||||||| |||||||||||||||||||    
T  16959818 ggtgtgtgtcattctagctgagcttttgttcctttttgattgatatttgcaccaccgcaaatcatgttgtatgtcttacatattgtgtgctggattctg 16959916  T

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Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 277 - 787
Target Start/End: Complemental strand, 30935694 - 30935178
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagct-ctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgt 375  Q
    ||||| |||||| |||||||| |||||||| |||||| ||||||||| | |||||| ||||| ||| ||||||| | | ||| |||||||||||| ||||    
T  30935694 agggtgttttgaaggtgtgtgtccttcgagctgagcttctttttcctttgtgattgttgtttgctcaaccgcaaatcatgtcatccgtcttacttgttgt 30935595  T
Q  376 gtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgttt-ggttggctacagtgtttctctgaaagatc 474  Q
    |||||||||||||||| |||  | ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||   || |    
T  30935594 gtgctggattctgatgggccggttattttgcttcgagattgggagttggcgtctagcggcattattgttttggttggctacagtgtttctctggtggacc 30935495  T
Q  475 gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggtttt 574  Q
    ||||||||||||||||| |||||||||||| |||||| |||||||| ||||| ||||||||| ||||||||||| |||| | | |||| |||||||||||    
T  30935494 gggggtaaggggtgcccttctgatttggttttgaagtttggtgggctgatcgcttttgattcaagatcgggagttagttatttggttcaagtttggtttt 30935395  T
Q  575 gggctttttaggtgttcctt-cggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttgg 673  Q
    | ||||||| |||||| ||| | | ||| | ||| || |||||||||||||| ||||||| ||||||| ||| ||||||||||| ||||| |  ||||||    
T  30935394 gagcttttttggtgtttctttcagcggaccggagattacgcggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtggctcggtgttgg 30935295  T
Q  674 tgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt---agtggttggttagtata 770  Q
    ||||||||| || ||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||    |||| |||| ||||||    
T  30935294 tgatgaggactgagttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagtgttatagatgtcgtttttttccggtggctggtaagtata 30935195  T
Q  771 ggagtcagttttagggg 787  Q
     ||||||||||||||||    
T  30935194 agagtcagttttagggg 30935178  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 283 - 787
Target Start/End: Complemental strand, 1653183 - 1652677
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    |||||||||||| || | ||| || |||||| |||||||| ||||| |||||||| ||| | ||||| | | |  ||| ||||||||||||||||||||     
T  1653183 ttttgagggtgtctgtcattcaagctgagct-tttttcctttttgactgatgtttgctctatcgcaaatcatgctgtctgtcttacttattgtgtgctga 1653085  T
Q  383 attctgatgagccattcattttgcttcgagatcgggagttggcgtct-agaggcattattgtttggttggctacagtgtttctctgaaagatcggggg-t 480  Q
    ||||||||| |||  | |||||||||| ||||||||||||||||| | ||   |||| ||||||||   ||||||||| |||||||   || |||||| |    
T  1653084 attctgatgggccgattattttgcttcaagatcgggagttggcgttttagcaacatttttgtttggcgagctacagtggttctctggtcgaccggggggt 1652985  T
Q  481 aaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctt 580  Q
    || | ||| || ||||||||||| ||||| ||| |||||||||||  ||||||||||||||| ||||| |||||| | |||| |||||||||||||||||    
T  1652984 aatgagtgtccttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggctt 1652885  T
Q  581 tttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgag 680  Q
    ||| ||||||| ||||||||| | ||||||  ||||||| ||||| ||||||| ||||||| ||| ||||| ||| |  |||| |  |||||||||| ||    
T  1652884 ttttggtgttctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggctcggtgttggtgataag 1652785  T
Q  681 gattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttg-ttttttagtggttggttagtataggagtcagt 779  Q
    || ||| |  |||||| |||||||||||| |||||||||||||||  || |||||||||| |||| | |||||||||||||| | |  |||| |||||||    
T  1652784 gaatggttcctctttttcaagggtgttcttttgaggtgagtagtgacgatgagtgttatgaatgtcgtttttttagtggttgttaaacatagaagtcagt 1652685  T
Q  780 tttagggg 787  Q
    ||||||||    
T  1652684 tttagggg 1652677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 483 - 623
Target Start/End: Original strand, 5556555 - 5556696
Alignment:
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggcttt 581  Q
    ||||||||| | |||||||||  || ||||||||||| |||||| |||||||||||||||||||||||||||| | |||| || ||||||||||||||||    
T  5556555 ggggtgcccttttgatttggtcttgtagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttt 5556654  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtgga 623  Q
    | |||||||| ||||||||| | ||||||  | |||||||||    
T  5556655 tcaggtgttctttcggtggaccggaggtttagaggtggtgga 5556696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 364 - 625
Target Start/End: Original strand, 47945577 - 47945833
Alignment:
Q  364 cttacttattgtgtgctggattctgatgagccattcatttt-gcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgttt 462  Q
    ||||||| ||||||||||||||||| || |||  | | ||| |||||||||||||||||||||||||||  ||||| |||||||| |    |||    ||    
T  47945577 cttactttttgtgtgctggattctggtgtgccggttactttagcttcgagatcgggagttggcgtctagcagcattcttgtttggcta---aca----tt 47945669  T
Q  463 ctctgaaagatc-gggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgtt 561  Q
    |||||   || | ||||||||||||||||| |||| || ||| || ||||| ||||||||||||  |||||||||||||||||||||||||| | | | |    
T  47945670 ctctggtggaccagggggtaaggggtgcccgtctggttgggtcctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggct 47945769  T
Q  562 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    | |||||| ||||||||||||  ||||||| ||||||||  | ||| ||| | |||||||||||    
T  47945770 caagtttgattttgggcttttatggtgttctttcggtggtccggagattgtgaggtggtggaag 47945833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 400 - 638
Target Start/End: Complemental strand, 823614 - 823375
Alignment:
Q  400 attttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatt 499  Q
    |||||||||| ||||| |||||||| ||||||  ||| | |||||||| | | ||  |||||||||||   || || |||||| |||||||| ||  |||    
T  823614 attttgcttcaagatcaggagttggtgtctagttgcaatcttgtttggcttgttatggtgtttctctggtggaccgtgggtaaagggtgcccttcaaatt 823515  T
Q  500 tggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctt-tttaggtgttccttcggt 598  Q
    ||||| ||||| ||  ||||||||||  |||||||||||||||| ||||||||| | |  ||| ||||| ||||||||||| ||| ||||||| ||||||    
T  823514 tggttatgaagactaatgggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggcttattttggtgttctttcggt 823415  T
Q  599 ggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
     || ||||||||| | ||||| ||||| ||||||| ||||    
T  823414 agaccagaggttgagaggtggcggaagctgaatgatcttt 823375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 669 - 770
Target Start/End: Original strand, 34574847 - 34574948
Alignment:
Q  669 gttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagta 768  Q
    |||||||||||||| | | || ||||||| ||||||||||| |||||||||||| || ||||||||||||||||||| |||||||| |||||||||| ||    
T  34574847 gttggtgatgaggacttgattctcttttataagggtgttcttttgaggtgagtattgatgacgagtgttatggatgtcgttttttaatggttggttacta 34574946  T
Q  769 ta 770  Q
    ||    
T  34574947 ta 34574948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 362 - 641
Target Start/End: Original strand, 27398821 - 27399102
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattcatttt-gcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgt 460  Q
    ||||||| ||||||||||||||||||| ||  ||| | ||||| |||||||||||||||||| | ||||||   || | |||||||| ||||||  ||||    
T  27398821 gtcttacatattgtgtgctggattctggtgcaccagttatttttgcttcgagatcgggagtttgtgtctagctacaatcttgtttggctggctatggtgt 27398920  T
Q  461 ttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgt 560  Q
    ||||||    || | || |  | |||||||| |||  |||||| |  |||||||||||  | |||| ||| |||||||| || |||||||||| | | ||    
T  27398921 ttctctagtggaccaggcgagatgggtgcccttctattttggtccgaaagtctggtggcacaatcgctttagattcgaggtcaggagtcagttatttggt 27399020  T
Q  561 tctagtttggttttgggc-tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    || ||||||||||||||| ||||| ||||||| || |||||| ||||||||| | ||||||||  | ||||||| |||||||    
T  27399021 tcaagtttggttttgggctttttttggtgttcttttggtggaccagaggttgagaggtggtggttgctgaatgatctttaga 27399102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 277 - 600
Target Start/End: Complemental strand, 25594822 - 25594499
Alignment:
Q  277 agggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtg 376  Q
    ||||| ||||||||||| ||| |||| ||| ||| |  |||||||| |||||||||||||| | |||||||   | | |||||| ||||||||||||||     
T  25594822 agggtgttttgagggtgcgtgtcctttgagctgaacattttttcctttttgattgatgtttgcaccaccgcttttcatgtcgtctgtcttacttattgta 25594723  T
Q  377 tgctggattctgatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcg 475  Q
    ||||||||||||||| ||| |||  |||| |||||||||||||| |||| |||| |      | ||||| |  |||||   |  ||||||||   || ||    
T  25594722 tgctggattctgatgggccgattactttttcttcgagatcgggacttggtgtctggctatcatcttgttagactggct-ttgattttctctggcggaccg 25594624  T
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttg 575  Q
    |||||| ||||||||| |||  |||||| || ||||||||||||  ||||| ||||||||| ||||||| ||| | |||| | |||| || |||| ||||    
T  25594623 ggggtatggggtgcccttctattttggtcctcaagtctggtgggtagatcgcttttgattctagatcggaagttaattctttggttcaagattggctttg 25594524  T
Q  576 ggctttttaggtgttccttcggtgg 600  Q
    |||||||| ||||||| ||| ||||    
T  25594523 ggcttttttggtgttctttcagtgg 25594499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 638
Target Start/End: Original strand, 14879421 - 14879576
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctttt 582  Q
    |||||||| ||||||| ||| || ||||||||||||||||||  |||||||||||||||||||||| ||||  | | || || ||||||||||| |||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttt 14879520  T
Q  583 taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    || |  ||| ||||||||||  ||||| | | ||||||||||| | ||||| ||||    
T  14879521 tatggtttctttcggtggataggaggtcgagaggtggtggaagcttaatgatcttt 14879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 484 - 555
Target Start/End: Original strand, 19176488 - 19176559
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||  || |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  19176488 gggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttct 19176559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 625
Target Start/End: Complemental strand, 33144020 - 33143902
Alignment:
Q  508 aagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctttttaggtgttccttcggtggatcaga 606  Q
    |||||||||||  |||||  |||||||||||||||||||||||||||| | | || || || | |||||||||||||| |  ||| ||||||||||||||    
T  33144020 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctttttatggtttctttcggtggatcaga 33143921  T
Q  607 ggttgcgcggtggtggaag 625  Q
    ||| ||| |||||||||||    
T  33143920 ggtcgcgaggtggtggaag 33143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 559
Target Start/End: Original strand, 30127259 - 30127323
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttg 559  Q
    ||||||| ||| | ||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30127259 tgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttg 30127323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 37123366 - 37123468
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| | || |||||| || || | |||||||||||||  |||||||||||||| ||||||||||||| | | || | ||||||||||||||||    
T  37123366 aggggtgcccttatgttttggtcctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggcttt 37123465  T
Q  582 tta 584  Q
    |||    
T  37123466 tta 37123468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 43012374 - 43012432
Alignment:
Q  497 atttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  43012374 atttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttct 43012432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 14193924 - 14194028
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag--tttggttttgggct 579  Q
    |||||||||| ||||||||||| || |||||||| || ||||||  |||||||||||||| ||||||| ||||| | | || ||  ||||||||||||||    
T  14193924 aggggtgcccttctgatttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtttttggttttgggct 14194023  T
Q  580 tttta 584  Q
    |||||    
T  14194024 tttta 14194028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 638
Target Start/End: Complemental strand, 14755336 - 14755205
Alignment:
Q  508 aagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttg-ttctagtttggttttgggctttttaggtgttccttcggtggatcaga 606  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||| | | ||| || |||| |||||||||||||    ||| |||| |||||| ||    
T  14755336 aagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttggtttcgaggttggatttgggctttttattgtttctttcgatggatcgga 14755237  T
Q  607 ggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| | | | ||||||||| ||||||| ||||    
T  14755236 ggtcgagagatggtggaagttgaatgatcttt 14755205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 555
Target Start/End: Original strand, 17550968 - 17551014
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttct 17551014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 623
Target Start/End: Original strand, 38488835 - 38488921
Alignment:
Q  538 agatcgggagtcagttctcttgttctagtttggttttgggcttt-ttaggtgttccttcggtggatcagaggttgcgcggtggtgga 623  Q
    ||||||||||||||| || |  ||| |||||||||||||||||| |||||||||| ||||||||| | |||||||| |||| |||||    
T  38488835 agatcgggagtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggttgcacggttgtgga 38488921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 513 - 582
Target Start/End: Complemental strand, 39021342 - 39021273
Alignment:
Q  513 tggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt 582  Q
    |||||||||||||  |||||||||||| ||||||||||||||| | | || ||| |||||||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggctttt 39021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 550
Target Start/End: Complemental strand, 34475851 - 34475783
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    ||||||||||  || ||||| ||||  |||||||||||||||||  |||||||||||||||||||||||    
T  34475851 aggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 401 - 548
Target Start/End: Complemental strand, 23328527 - 23328381
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||||||||||||| ||||||  ||| | |||||||  | | ||  ||||| |||||    | ||||||  ||||||||||   ||||||    
T  23328527 ttttgcttcgagatcgggagttggtgtctagctgcaattttgtttgacttgatatggtgtt-ctctggtgtaccgggggcgaggggtgccctgttgattt 23328429  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagt 548  Q
    |||||| |||| |||||| ||||||  |||||||||||||||||||||    
T  23328428 ggttctaaagtttggtggaccgatcacttttgattcgagatcgggagt 23328381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 638
Target Start/End: Original strand, 25647670 - 25647826
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag--tttggttttgggcttt 581  Q
    |||||||| ||||||||||| || |||||||  ||||| |||  |||||||||||||||||||||  ||||| | | |  ||  ||||||||| ||||||    
T  25647670 gggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtttttggttttaggcttt 25647769  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| |  ||| || |||||||| ||||| | | ||||||| ||| ||||||| ||||    
T  25647770 ttatggtttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatcttt 25647826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 31424209 - 31424290
Alignment:
Q  471 gatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagt 552  Q
    |||||||||| |||||||||   |||||||| ||    |||||||| ||||| ||| |||||||||||||||||||||||||    
T  31424209 gatcgggggtgaggggtgccttactgatttgttttcagagtctggtaggccggtcgcttttgattcgagatcgggagtcagt 31424290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 40023667 - 40023602
Alignment:
Q  484 gggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtc 549  Q
    ||||||||  ||||||| ||| | ||||||||||| ||||||  ||||||||||||||||||||||    
T  40023667 gggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 551
Target Start/End: Original strand, 45398780 - 45398849
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcag 551  Q
    ||||||||||  ||||||||| | | ||||||||||| ||||||  |||||||||||||||| |||||||    
T  45398780 aggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcag 45398849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 20710780 - 20710740
Alignment:
Q  507 gaagtctggtgggccgatcgattttgattcgagatcgggag 547  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  20710780 gaagtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 9584124 - 9584077
Alignment:
Q  508 aagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||    
T  9584124 aagtctggtggatcgatcacttttgattcgagatcgggagtcagttct 9584077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 555
Target Start/End: Original strand, 20611801 - 20611840
Alignment:
Q  516 tgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  20611801 tgggccgatcatttttgattcgagatcgggagtcagttct 20611840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 3e-72; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 301 - 679
Target Start/End: Original strand, 35800293 - 35800670
Alignment:
Q  301 ttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagccattca 400  Q
    |||||| |||||| |||| ||| ||||| ||||| || ||||||||||| | | |||||| ||||||||||||||||| |||||||||||| | |  | |    
T  35800293 ttcgagctgagcttttttccctttttgagtgatgattgctccaccgcaaatcatgtcgtctgtcttacttattgtgtgttggattctgatgggtcggtta 35800392  T
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||| |||||| ||| || |  | || | ||||||||||||| ||| ||||||||||   |||||||| |||| ||||||| ||||||||    
T  35800393 ttttgcttcgagattgggagtgggcatccaacgacaatcttgtttggttggcgacaatgtttctctggtggatcgggg-taagtggtgcccttctgattt 35800491  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtgg 600  Q
    |||||||||||||||||  ||||||| ||||||||||||||||| |||||||||| |  ||| |||||||||||||||||||| ||||||| ||||||||    
T  35800492 ggttctgaagtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggcttttttggtgttctttcggtgg 35800591  T
Q  601 atcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatga 679  Q
    | | |||||| |||||||||||||  ||||||| |||| |  ||| ||||||| ||| ||||| |  ||||||||||||    
T  35800592 accggaggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggctcgttgttggtgatga 35800670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 283 - 625
Target Start/End: Original strand, 12295959 - 12296302
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgg 382  Q
    ||||||||||  ||| |||||||| |||||  |||||||| |||||| ||||||| | ||||||||| ||  |||||| ||||||| |||||||||||||    
T  12295959 ttttgagggtacgtgtccttcgagctgagcattttttcctttttgatcgatgtttgcaccaccgcaaatttagtcgtctgtcttacatattgtgtgctgg 12296058  T
Q  383 attctgatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggta 481  Q
    |||||| || ||| |||  |||||||||||||||||||||||||||||||  ||||| || ||||| | ||||| ||| | ||||    || ||||||||    
T  12296059 attctggtgggccgattacttttgcttcgagatcgggagttggcgtctagctgcattcttatttggctagctacggtgatcctctagtggaccgggggta 12296158  T
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||||||| |||||| ||||||||||||| ||||| || |||||||||||||||   |||||||||| | |||| |||||| |||||||||||    
T  12296159 aggggtgcccctctggtttggtcctgaagtctggtgtgccgagcgcttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggcttt 12296258  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    || ||||||| ||||||||| | ||||||| | |||||||||||    
T  12296259 tttggtgttctttcggtggaccggaggttgtgtggtggtggaag 12296302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 289 - 598
Target Start/End: Complemental strand, 46699075 - 46698765
Alignment:
Q  289 gggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctg 388  Q
    ||||||||| |||||||| |||||  ||||| || |||||||||||||| | |||| |||| ||  ||  || ||||||| |||||||||||||||||||    
T  46699075 gggtgtgtgtccttcgagctgagcattttttactttttgattgatgtttgcaccactgcaaattttgtattctgtcttacatattgtgtgctggattctg 46698976  T
Q  389 atgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggt 487  Q
     || ||| |||  |||||||||||||||||||||||| ||||||  ||| | |||||||||  ||||||| |||||| ||   || || ||||  |||||    
T  46698975 -tgggccgattacttttgcttcgagatcgggagttggtgtctagctgcagtcttgtttggtaagctacagagtttctttggtggaccgagggtgtggggt 46698877  T
Q  488 gcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctag-tttggttttgggctttttagg 586  Q
    |||| ||||||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||| | |||| || |||| ||||||||| ||||||    
T  46698876 gcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgtttagg 46698777  T
Q  587 tgttccttcggt 598  Q
    ||||| ||||||    
T  46698776 tgttctttcggt 46698765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 363 - 638
Target Start/End: Original strand, 38929698 - 38929967
Alignment:
Q  363 tcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtt 461  Q
    |||||||| ||||||||||||||||| || |||  | | ||||||||||||||||| ||||||||| |||    ||| |||||||||||||        |    
T  38929698 tcttactttttgtgtgctggattctggtgggccggttacttttgcttcgagatcggaagttggcgtttagctctattcttgtttggttggca-------t 38929790  T
Q  462 tctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgtt 561  Q
    ||||||   || |||||||||||||||||| |||| || ||| |||||||||| ||||||||||  |||||||||||||||  ||||||||||| | | |    
T  38929791 tctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggct 38929890  T
Q  562 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    | |||||| ||||||||||||  ||||||| |||||||   | ||||||| | ||||||||||| ||| ||| ||||    
T  38929891 caagtttgattttgggcttttatggtgttctttcggtgatccggaggttgtgaggtggtggaagttgattgatcttt 38929967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 496 - 623
Target Start/End: Original strand, 16501729 - 16501858
Alignment:
Q  496 gatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggc-tttttaggtg-ttcct 593  Q
    |||||| | ||||||| |||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||| ||| |    
T  16501729 gatttgatcctgaagtttggtgggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggcttttttaggtgtttctt 16501828  T
Q  594 tcggtggatcagaggttgcgcggtggtgga 623  Q
    |||||||| | ||| ||| |||||||||||    
T  16501829 tcggtggaccggagattgtgcggtggtgga 16501858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 579 - 724
Target Start/End: Complemental strand, 43374094 - 43373949
Alignment:
Q  579 tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatg 678  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||||||||| ||| ||| ||||||| ||  |||||||| |||||| | |  |||||||||||    
T  43374094 ttttttggtgttctttcagtggatcggaggttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatg 43373995  T
Q  679 aggattgggttatcttttacaagggtgttctcttgaggtgagtagt 724  Q
    | || | | || ||||||||||||||||||| ||||||||||||||    
T  43373994 atgacttgtttctcttttacaagggtgttcttttgaggtgagtagt 43373949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 474 - 625
Target Start/End: Original strand, 28966843 - 28966994
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttt 573  Q
    |||||||||| || |||| |||  || ||| |||||||||||| || |||||| |||||||||||||| ||||||||||||| | | || ||||||||||    
T  28966843 cgggggtaagtggcgcccgtctagttgggtcctgaagtctggtagggcgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggttt 28966942  T
Q  574 tgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    |||||||||  | ||||| ||||||||  | ||||||| | |||||||||||    
T  28966943 tgggcttttaggatgttctttcggtggtccggaggttgtgaggtggtggaag 28966994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 476 - 630
Target Start/End: Complemental strand, 22811263 - 22811109
Alignment:
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttg 575  Q
    ||||| ||| |||||| |||||||||||  | ||||||||||||||||||  |||| ||||||||||||||||||||||| | | || |||||||||||     
T  22811263 ggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtttggtttta 22811164  T
Q  576 ggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaa 630  Q
    ||||||||| |  |||  ||| |||||  ||||||| | ||||||||||| ||||    
T  22811163 ggctttttatggtttctctcgatggattggaggttgagaggtggtggaagttgaa 22811109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 609
Target Start/End: Original strand, 25753074 - 25753283
Alignment:
Q  400 attttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatt 499  Q
    |||||||||||||||||||||| || ||||||  ||| | ||||||||   | |   |||||||||||    | ||| ||| ||| |||||| ||| |||    
T  25753074 attttgcttcgagatcgggagtcggtgtctagctgcaatcttgtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatt 25753173  T
Q  500 tggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtg 599  Q
    |||| || |||||||||||| |||||  |||||||||||||||||||||||||||| | | || |||||| ||||||||||||||    ||| |||||||    
T  25753174 tggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggctttttattgtttctttcggtg 25753273  T
Q  600 gatcagaggt 609  Q
    |||| |||||    
T  25753274 gatcggaggt 25753283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 495 - 603
Target Start/End: Original strand, 49747524 - 49747632
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttcctt 594  Q
    |||||||||||| |||||||||| |||||||  |||||||| ||||||| ||||||||||| ||| || |||||||||||| |||||||| | |||| ||    
T  49747524 tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttttgatcaagtttggttttgagctttttatgggttcttt 49747623  T
Q  595 cggtggatc 603  Q
    | |||||||    
T  49747624 ctgtggatc 49747632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 482 - 638
Target Start/End: Complemental strand, 53823518 - 53823362
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| |||||||||||  | ||||||||||| || |||  |||||||||||||||||||||||||||| | | || |||||||||||||| |||    
T  53823518 aggggtgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggtttt 53823419  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||| |  ||| |||||| ||||  |||| | | ||||||||||| ||| ||| ||||    
T  53823418 ttatggtttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatcttt 53823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 401 - 603
Target Start/End: Original strand, 19673004 - 19673205
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||||||||||  | ||||||  ||| | |||||||| | | ||   | ||||||||   |||||||||| |||||||||| |||| |||    
T  19673004 ttttgcttcgagatcgggagtcagtgtctagctgcaatcttgtttggcttgatatgatatttctctggttgatcgggggtgaggggtgcccttctgtttt 19673103  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtgg 600  Q
    ||| || ||||||||||| ||  ||  |||| |||||||||| |||||||||||| | | || ||||| |||||||| ||| | ||||||| ||||||||    
T  19673104 ggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtttagttttgggttttgttggtgttctttcggtgg 19673202  T
Q  601 atc 603  Q
    |||    
T  19673203 atc 19673205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 315 - 447
Target Start/End: Original strand, 50102351 - 50102484
Alignment:
Q  315 tttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctggattctgatgagcc-attcattttgcttcgaga 413  Q
    ||||| || |||||||||||||| | |||||| || ||  |||||| ||||||| ||||||||||||||||||| | | || |||  |||||||||||||    
T  50102351 ttttttctttttgattgatgtttgcaccaccgtaaattttgtcgtctgtcttacatattgtgtgctggattctggtcaaccgattacttttgcttcgaga 50102450  T
Q  414 tcgggagttggcgtctagaggcattattgtttgg 447  Q
    | || |||||||||||||  ||||| ||||||||    
T  50102451 ttggaagttggcgtctagttgcattcttgtttgg 50102484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 482 - 582
Target Start/End: Complemental strand, 31050759 - 31050659
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||| || ||| | |||  |||| | |||||||||||    
T  31050759 aggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggcttt 31050660  T
Q  582 t 582  Q
    |    
T  31050659 t 31050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 620
Target Start/End: Complemental strand, 24740192 - 24740061
Alignment:
Q  490 ccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggct-ttttaggtg 588  Q
    |||||||| ||||| | || ||||||||||||||||| || | |||| |||||||||||||||| | | |||| | |||||||||||||| |||| |  |    
T  24740192 ccctctgagttggtcccgatgtctggtgggccgatcgcttataattcaagatcgggagtcagttatttggttcaaatttggttttgggctctttttgtcg 24740093  T
Q  589 ttccttcggtggatcagaggttgcgcggtggt 620  Q
    ||| ||| ||||||| ||||||| ||||||||    
T  24740092 ttctttccgtggatcggaggttgtgcggtggt 24740061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 494 - 584
Target Start/End: Complemental strand, 6600030 - 6599940
Alignment:
Q  494 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttttta 584  Q
    ||||||||| |||  |||||||||||||||||| |||||||| ||||||||||||| ||||| |  ||| ||||| |||||||||| ||||    
T  6600030 ctgatttggctctagagtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttgttttgggctattta 6599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 402 - 555
Target Start/End: Complemental strand, 21387379 - 21387228
Alignment:
Q  402 tttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgatttg 501  Q
    |||||||||||||||||||||||  |||||  ||| | | |||||||||| ||   |||  |||||   |||||||||| |||  | ||| |||||||||    
T  21387379 tttgcttcgagatcgggagttggtatctagtagcaatctggtttggttggttatgatgt--ctctggtggatcgggggtgaggaatacccttctgatttg 21387282  T
Q  502 gttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    || ||| |||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  21387281 gtgctggagtctggtggaccgatcacttttgattcgagatcggaagtcagttct 21387228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 482 - 638
Target Start/End: Complemental strand, 2061835 - 2061679
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    ||||||||||   ||||||| | || ||||||||||||| ||||  |||||||||||||| | ||||||||||| | | ||   |||| |||||||||||    
T  2061835 aggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttggatcagttttgattttgggcttt 2061736  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    | | |  ||| ||||||||||| ||||| | | ||||||||||| ||||||| ||||    
T  2061735 tgatgatttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatcttt 2061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 555
Target Start/End: Complemental strand, 19815402 - 19815248
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    |||||||||||||||| |||| || ||||||  ||| | |||||||| | | ||  || ||| ||||   || ||||||| |||||||||| |||| |||    
T  19815402 ttttgcttcgagatcgagagtcggtgtctagctgcaatcttgtttggcttgatattgtatttttctggttgaccgggggtgaggggtgcccttctgtttt 19815303  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||| || ||||||||||| |||||   |||| |||||||||| ||||||||||||    
T  19815302 ggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttct 19815248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 541
Target Start/End: Complemental strand, 21988137 - 21987964
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgt 460  Q
    ||||||||| |||||||||| |||||| || |||  | | ||||| ||||||||| |||||||| ||||||  ||||| |||||||| ||||            
T  21988137 gtcttactttttgtgtgctgaattctggtgggccggttacttttgtttcgagatcaggagttggtgtctagctgcattcttgtttggctggca------- 21988045  T
Q  461 ttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagat 541  Q
    |||||||   || |||||||||||||||||| |||| || ||| |||||||||| ||  ||||||| ||||||||||||||    
T  21988044 ttctctggtggaccgggggtaaggggtgcccgtctggttgggtcctgaagtctgatgaaccgatcgcttttgattcgagat 21987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 638
Target Start/End: Complemental strand, 41118018 - 41117908
Alignment:
Q  528 ttttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggt 627  Q
    ||||||||||||||||| ||| |||||| | | || | || |||||||||||||||| |  ||| |||| |||||||||||| | | ||||||||||| |    
T  41118018 ttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggtttctttcgatggatcagaggtcgagaggtggtggaagct 41117919  T
Q  628 gaatgaccttt 638  Q
    |||||| ||||    
T  41117918 gaatgatcttt 41117908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 509 - 638
Target Start/End: Complemental strand, 38637302 - 38637174
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagagg 608  Q
    ||||||| |||||||||  ||||||||||||||||||||||| |||| |||   ||  | |||||||||||||||| |  ||| || |||||||| ||||    
T  38637302 agtctggcgggccgatcacttttgattcgagatcgggagtcaattct-ttggcttaagtaggttttgggctttttatggtttcttttggtggatcggagg 38637204  T
Q  609 ttgcgcggtggtggaaggtgaatgaccttt 638  Q
    | | | ||||||||||| ||||||| ||||    
T  38637203 tcgagaggtggtggaagctgaatgatcttt 38637174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 2825779 - 2825831
Alignment:
Q  494 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcggga 546  Q
    ||||||||||||| ||||| ||||||||||||  |||||||||||||||||||    
T  2825779 ctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcggga 2825831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 19311446 - 19311369
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||| ||||||| || |||||||||||| | |||||||||||| |||||  ||||||||||||| ||||||||||||    
T  19311446 cgggggtgaggggtgtccttctgatttggtttt-aagtctggtgggtcgatcacttttgattcgaga-cgggagtcagtt 19311369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 477 - 584
Target Start/End: Complemental strand, 39421115 - 39421008
Alignment:
Q  477 gggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    |||| |||||||||| |||||| ||||  |  || ||||||||||||||  ||||||||||||||||||||||| |||  | | ||   |||||||||||    
T  39421115 gggtgaggggtgcccttctgatatggtcttatagcctggtgggccgatcacttttgattcgagatcgggagtcaattccttagatcagttttggttttgg 39421016  T
Q  577 gcttttta 584  Q
    ||||||||    
T  39421015 gcttttta 39421008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 36962700 - 36962642
Alignment:
Q  494 ctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagt 552  Q
    ||||||||||| || ||||||||||||||||   ||||||||||||||| |||||||||    
T  36962700 ctgatttggttttggagtctggtgggccgattacttttgattcgagatcaggagtcagt 36962642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 623
Target Start/End: Original strand, 43076975 - 43077107
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtca---gttctcttgttctagtttggttttgggc-tttttaggtgtt 590  Q
    |||||| ||| |||| |||  ||||||||||| |||| ||||||||||| ||||||    |||| | |||| |||||| |||||||| ||||||||||||    
T  43076975 tgatttagttatgaaatctaatgggccgatcgttttttattcgagatcgagagtcaacttttctttggttcaagtttgcttttgggcttttttaggtgtt 43077074  T
Q  591 ccttcggtggatcagaggttgcgcggtggtgga 623  Q
    | |||||| |||| || ||||  ||||||||||    
T  43077075 ctttcggttgatcggatgttgtacggtggtgga 43077107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 555
Target Start/End: Original strand, 4305701 - 4305782
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||| ||| |||||||  || ||||||| ||  ||||||||||| |||||  ||||||||||||||||||||| ||||||    
T  4305701 cgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttct 4305782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 8255011 - 8255084
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| || ||||||||||||||||||  ||||||| ||||||| | ||||||||||    
T  8255011 aggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttct 8255084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 555
Target Start/End: Original strand, 8268429 - 8268502
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||||||||  || ||||||| || ||||||||||||||||||  ||||||| ||||||| | ||||||||||    
T  8268429 aggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttct 8268502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 509 - 553
Target Start/End: Complemental strand, 39041344 - 39041300
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcagtt 39041300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 641
Target Start/End: Complemental strand, 21983857 - 21983759
Alignment:
Q  543 gggagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    ||||||||||||| | | || ||||| ||| |||||||||  ||||||| ||||||||  | ||||||| | ||||||||||| ||| ||| |||||||    
T  21983857 gggagtcagttctttggctcaagtttagttatgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttaga 21983759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 509 - 547
Target Start/End: Complemental strand, 40813851 - 40813813
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggag 547  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  40813851 agtctggtgggccgatcacttttgattcgagatcgggag 40813813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 28966671 - 28966736
Alignment:
Q  283 ttttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgca 348  Q
    ||||||||||||||| ||||||||  ||||  || ||||| |||||||||||||| | ||||||||    
T  28966671 ttttgagggtgtgtgtccttcgagccgagcatttgttcctttttgattgatgtttgcaccaccgca 28966736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 638
Target Start/End: Original strand, 49528143 - 49528212
Alignment:
Q  569 ggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    |||||||||||||||| |  ||| ||||||||||| ||||| | | ||||||||||| ||||||| ||||    
T  49528143 ggttttgggctttttatggtttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatcttt 49528212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 53756765 - 53756802
Alignment:
Q  507 gaagtctggtgggccgatcgattttgattcgagatcgg 544  Q
    |||||||||||||||||||  |||||||||||||||||    
T  53756765 gaagtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 278 - 778
Target Start/End: Original strand, 12793894 - 12794385
Alignment:
Q  278 gggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgt 377  Q
    |||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| ||| | | ||| |  ||||||||||||||||    
T  12793894 gggtgttttgagggtgtgtgtccttcgagttgagctttttttcctttttgattgatatttgctccacctcaaatcatgtcatttgtcttacttattgtgt 12793993  T
Q  378 gctggattctgatgagccattcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcggg 477  Q
    |||||||||||||| | |  || |||||||||||||||||||||||| |||||    |||||| |||||||||||||  ||||||||||     | | ||    
T  12793994 gctggattctgatgggtcggtccttttgcttcgagatcgggagttggagtctaacaacattatcgtttggttggctatggtgtttctctagtgaaccagg 12794093  T
Q  478 ggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcga-ttttgattcgagatcgggagtcagttctcttgttctagtttggttttgg 576  Q
    ||||||||||| || |||| ||||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||   || | ||||| ||||| |    
T  12794094 ggtaaggggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttcttgggtccaagtttagtttttg 12794193  T
Q  577 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtga 676  Q
    |||||           ||  |||||   |||||||||||||||||||||  || ||| ||||||| ||| | |||||| || ||| | |  |||||| |     
T  12794194 gcttt-----------tttagtggactggaggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggt 12794282  T
Q  677 tgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagt 775  Q
    |||||| ||| || ||||||| ||||||||||| ||||||||||||||||  | |||||||||| |||| ||||||| |||||| | | |||||||||||    
T  12794283 tgaggactggtttctcttttataagggtgttcttttgaggtgagtagtggcaatgagtgttatgaatgtcgttttttcagtggtcgataagtataggagt 12794382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 478 - 751
Target Start/End: Complemental strand, 26216119 - 26215846
Alignment:
Q  478 ggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttggg 577  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||||   ||||   ||||||||||||    
T  26216119 ggtaagaggtgcccttctgatttgattct-aagtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttggg 26216021  T
Q  578 ctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagtt-cttcggaggtggcacaatgttggtga 676  Q
    |||||| ||||||| || |||||| | ||| ||||||||||||||||| ||| ||| |||| || ||| |||| ||||  | ||||| || |||||||||    
T  26216020 cttttttggtgttcttttggtggaccggagattgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggctcagtgttggtga 26215921  T
Q  677 tgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttt 751  Q
    |||||| | | || |||||||||  |||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  26215920 tgaggactagtttctcttttacattggtgttcttttgaggtgagtcgtggtgacgagtgttatgaatgttgtttt 26215846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 457 - 638
Target Start/End: Complemental strand, 32935461 - 32935280
Alignment:
Q  457 gtgtttctctgaaagatcgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctc 556  Q
    |||||||| |||  |||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  32935461 gtgtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctt 32935362  T
Q  557 ttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
        || |||||| |||||| ||||||  |||||| |||||||| ||| |||||| | ||||||||||| || |||| ||||    
T  32935361 ggactcaagtttgattttggacttttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatcttt 32935280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 493 - 641
Target Start/End: Complemental strand, 26534805 - 26534653
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttc-tctt--gttctagtttggttttgggc-tttttaggtg 588  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||| |||||||||||| ||||  |||| ||||||||||||||| ||||||||||    
T  26534805 tctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttttttaggtg 26534706  T
Q  589 ttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    ||| ||||||||| |  |||||| ||||||||||||| ||| ||| |||||||    
T  26534705 ttctttcggtggaccgaaggttgtgcggtggtggaagctgattgatctttaga 26534653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 495 - 623
Target Start/End: Original strand, 21266110 - 21266238
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttcctt 594  Q
    ||||||||| || ||| ||||||||||||||| ||||||||||||||||||||| |||| | | |||| |||||||||||||||||| | ||||||| ||    
T  21266110 tgatttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggctttgttggtgttcttt 21266209  T
Q  595 cggtggatcagaggttgcgcggtggtgga 623  Q
     |||||| ||||| ||| |||||||||||    
T  21266210 tggtggaccagagattgtgcggtggtgga 21266238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 499 - 641
Target Start/End: Original strand, 9224042 - 9224185
Alignment:
Q  499 ttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttt-taggtgttccttcgg 597  Q
    ||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||   ||||||||||||||||| | |||| || |||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttcagttttggttttgggcttttattggtgctctttcgg 9224141  T
Q  598 tggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    || | | ||||||| ||||||||||||| ||||||| |||||||    
T  9224142 tgcaccggaggttgtgcggtggtggaagctgaatgatctttaga 9224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 401 - 568
Target Start/End: Complemental strand, 33968791 - 33968624
Alignment:
Q  401 ttttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaaggggtgcccctctgattt 500  Q
    ||||||| ||||||||| ||||||||||||   | ||| |||||||||||||||| |||||||||||    | || ||||| |||||| || ||||||||    
T  33968791 ttttgctccgagatcggaagttggcgtctaactgtattcttgtttggttggctacggtgtttctctggtgaaccgagggtatggggtggccttctgattt 33968692  T
Q  501 ggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagttt 568  Q
    |||| || ||||| |||||  ||||| |||||||||||||||||||||||||||| | |||| |||||    
T  33968691 ggttatgtagtctagtgggtagatcgcttttgattcgagatcgggagtcagttctttggttcaagttt 33968624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 474 - 638
Target Start/End: Complemental strand, 20701908 - 20701744
Alignment:
Q  474 cgggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttt 573  Q
    ||||||| |||||||||| |||||||||||  |  || |||||| |||||||  ||||||||||||||||||||| |||||| | | |  ||||||||||    
T  20701908 cgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttt 20701809  T
Q  574 tgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 638  Q
    ||||||||||| |  ||| ||||||||||| ||||| | | ||| ||||||| ||||||| ||||    
T  20701808 tgggctttttatggtttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatcttt 20701744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 495 - 623
Target Start/End: Original strand, 21264983 - 21265111
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggctttttaggtgttcctt 594  Q
    ||||||||| |||||| || |||||||||| | ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||| | ||||||| ||    
T  21264983 tgatttggtcctgaagactagtgggccgatagcttttgattcgagatcgggagttagttatctggttcaagtttggttttgggctttgttggtgttcttt 21265082  T
Q  595 cggtggatcagaggttgcgcggtggtgga 623  Q
     | |||| | ||| ||| |||||||||||    
T  21265083 tgatggaccggagattgtgcggtggtgga 21265111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 555
Target Start/End: Complemental strand, 16510399 - 16510325
Alignment:
Q  481 aaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||||  || |||||||||| |||||| |||||||||||  |||||||||||||| | |||||||||||    
T  16510399 aaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttct 16510325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 34090374 - 34090418
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 13098781 - 13098711
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattca-ttttgcttcgagatcgggagttggcgtctag 431  Q
    ||||||||| |||||||||| ||||||||| |||  | | |||||||||||||| ||||||||||||||||    
T  13098781 gtcttactttttgtgtgctgcattctgatgggccggttacttttgcttcgagattgggagttggcgtctag 13098711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 553
Target Start/End: Original strand, 34105410 - 34105468
Alignment:
Q  495 tgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||| ||||  ||| |||||||||||||  ||||||||||||||||||||||||||    
T  34105410 tgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtt 34105468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 641
Target Start/End: Complemental strand, 13098674 - 13098509
Alignment:
Q  476 ggggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttg 575  Q
    |||||||||||||||| |||| ||  || ||||||||| |||   |||||  || |||||| |||| |||||| |||||| | | || |||||||||||     
T  13098674 ggggtaaggggtgcccatctggttgagtcctgaagtctagtgcaacgatctcttctgattcaagattgggagttagttctttggctcaagtttggttttt 13098575  T
Q  576 ggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 641  Q
    ||||||||  |||||| ||||||||    ||||||| | || |||||||| ||| ||| |||||||    
T  13098574 ggctttttttgtgttctttcggtggtctggaggttgtgtggaggtggaagatgattgatctttaga 13098509  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 625
Target Start/End: Original strand, 20499914 - 20500047
Alignment:
Q  493 tctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttttta-ggtgttc 591  Q
    ||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||| ||  |||| | || ||| |||||   |||||| || ||| |||||||    
T  20499914 tctgatttgattctggagtatggtggaccgatcgcttttgattcgagatcggaagatagtttttttattcaagtttttctttgggattattatggtgttc 20500013  T
Q  592 cttcggtggatcagaggttgcgcggtggtggaag 625  Q
     |||| |||||  ||||||| | |||||||||||    
T  20500014 tttcgatggattggaggttgagaggtggtggaag 20500047  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 26216207 - 26216140
Alignment:
Q  278 gggtattttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccg 346  Q
    |||| |||||||||||||||  ||| ||| |||||| |||||||| |||||||||||||| ||||||||    
T  26216207 gggtgttttgagggtgtgtgttctttgagctgagct-tttttcctttttgattgatgtttgctccaccg 26216140  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 9223905 - 9223972
Alignment:
Q  362 gtcttacttattgtgtgctggattctgatgagccattcattttgcttcgagatcgggagttggcgtct 429  Q
    ||||||||| ||||||| ||||| ||| || |||  | ||||||||||||||||||||||||| ||||    
T  9223905 gtcttactttttgtgtgatggatgctggtgggccggttattttgcttcgagatcgggagttggtgtct 9223972  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 553
Target Start/End: Complemental strand, 9239263 - 9239224
Alignment:
Q  514 ggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  9239263 ggtgggccgatcgtttttgcttcgagatcgggagtcagtt 9239224  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 555
Target Start/End: Original strand, 3117508 - 3117550
Alignment:
Q  513 tggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  3117508 tggtgggccgatcacttttgattcaagatcgggagtcagttct 3117550  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 485 - 539
Target Start/End: Complemental strand, 3880677 - 3880623
Alignment:
Q  485 ggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgag 539  Q
    ||||||| ||||||||||| || |||| |||||||||||||  ||||||||||||    
T  3880677 ggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 759
Target Start/End: Original strand, 21266278 - 21266367
Alignment:
Q  670 ttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggt 759  Q
    |||||| ||||||||| ||| |||||||||| |||||||  ||| |||||||||||  || |  |||| ||||||| |||||| ||||||    
T  21266278 ttggtgttgaggattgagttttcttttacaacggtgttcctttggggtgagtagtgacgatggttgttctggatgtcgtttttcagtggt 21266367  T

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Target: scaffold1613 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 284 - 555
Target Start/End: Complemental strand, 1312 - 1041
Alignment:
Q  284 tttgagggtgtgtgcccttcgagttgagctctttttcctatttgattgatgtttactccaccgcaagttacgtcgtccgtcttacttattgtgtgctgga 383  Q
    |||||||||||||| |||||||| |||||  |||||||| |||||||||||||| | ||||||||| | | |||||  ||||||| ||||||||||||||    
T  1312 tttgagggtgtgtgtccttcgagctgagcattttttcctttttgattgatgtttgcaccaccgcaaatcatgtcgtttgtcttacatattgtgtgctgga 1213  T
Q  384 ttctgatgagcc-attcattttgcttcgagatcgggagttggcgtctagaggcattattgtttggttggctacagtgtttctctgaaagatcgggggtaa 482  Q
    ||||  || ||| |||  |||||||||||||| ||||||||| ||||||  ||| | ||||||| |||  |   |||||||||||   ||  |||  | |    
T  1212 ttctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatcttgtttgattgattttggtgtttctctggtggactgggaatga 1113  T
Q  483 ggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttct 555  Q
    ||||| ||| |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1112 ggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttct 1041  T

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Target: scaffold0200 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 482 - 631
Target Start/End: Original strand, 19367 - 19516
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| ||||||||||| || ||||||||||||||||||  ||||||||||||||||| |||||||||| | | || ||||||||||||||||||    
T  19367 aggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggcttt 19466  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaat 631  Q
    ||| |  ||| ||||||||||| ||||| | | | ||||||||| |||||    
T  19467 ttatggtttctttcggtggatcggaggtcgagagttggtggaagctgaat 19516  T

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Target: scaffold0119 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 482 - 631
Target Start/End: Complemental strand, 42235 - 42086
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttt 581  Q
    |||||||||| |||||||| || || ||||||||||||||||||  ||||||||||||||||| |||||||||| | | || |||||||||||||| |||    
T  42235 aggggtgcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattt 42136  T
Q  582 ttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaat 631  Q
    ||| |  ||| ||| ||||||| ||||| | | | ||||||||| |||||    
T  42135 ttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaat 42086  T

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Target: scaffold0050 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 632
Target Start/End: Original strand, 36691 - 36843
Alignment:
Q  482 aggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgt-tcta--gtttggttttgggc 578  Q
    |||||||||| ||||||||||| || |||||||| |||| ||||  |||||||||||||||||||||||||||| |||| || |   ||||||||||| |    
T  36691 aggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttct-ttgtctcaactttttggttttggtc 36789  T
Q  579 tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatg 632  Q
    |||||| |  ||| ||||||||||| ||||| | |  |||||||||| ||||||    
T  36790 tttttatgatttctttcggtggatcggaggtcgagatgtggtggaagttgaatg 36843  T

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Target: scaffold0620 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 3841 - 3885
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtcagtt 553  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggagtcagtt 3885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 485 - 609
Target Start/End: Original strand, 58114 - 58238
Alignment:
Q  485 ggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttgggcttttta 584  Q
    ||||||| || |||||||| || |||| |||||||||||||  ||||||||| ||||||| ||||| || | | | || ||||||||||| |||||||||    
T  58114 ggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtttggttttaggcttttta 58213  T
Q  585 ggtgttccttcggtggatcagaggt 609  Q
     |  ||| ||||||||||| |||||    
T  58214 tggtttctttcggtggatcggaggt 58238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 478 - 625
Target Start/End: Original strand, 6538 - 6685
Alignment:
Q  478 ggtaaggggtgcccctctgatttggttctgaagtctggtgggccgatcgattttgattcgagatcgggagtcagttctcttgttctagtttggttttggg 577  Q
    |||||||||||||| |||| ||  || |||||||||||||   |||||  ||||||||| |||| || ||| |||||| | | || ||||||||||| ||    
T  6538 ggtaaggggtgcccatctggttgagtcctgaagtctggtgcaacgatctcttttgattcaagattggtagttagttctttggctcaagtttggtttttgg 6637  T
Q  578 ctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 625  Q
    ||||||  |||||| ||||||||   |||||||| | || ||||||||    
T  6638 ctttttttgtgttctttcggtggtctagaggttgtgtggaggtggaag 6685  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 35841 - 35800
Alignment:
Q  509 agtctggtgggccgatcgattttgattcgagatcgggagtca 550  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  35841 agtctagtgggccgatcacttttgattcgagatcgggagtca 35800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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