View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_34 (Length: 274)
Name: NF11897_low_34
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_34 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 2657645 - 2657382
Alignment:
| Q |
1 |
tacatgcctgttcttaatgctagactagacacaatagtggttagattctaactattgtttgccttgactttgttaacgttgtatgtttgtttacatttta |
100 |
Q |
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| T |
2657645 |
tacatgcctgttcttaatgctagactagacacaatagtggttagattctaactattgtttgccttgactttgttaacattgtatgtttgtttacatttta |
2657546 |
T |
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| Q |
101 |
tttttcagatttgttgaacttgttagttgtcatgttctggatttatttcttcaatgaataagttattttggcttgttatttctgcaggtcttttcggcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
2657545 |
tttttcagatttgttgaacttgttagttgtcatgttctggatttatttcttcaatgaataagttattttggcttgttatttcagcaggtcttttcggagt |
2657446 |
T |
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| Q |
201 |
cgattcaacctcagctgtaggaggaattccttgttttttcaatgaattcgggctggactctctg |
264 |
Q |
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| T |
2657445 |
ctattcaacctcagctgtaggaggaatgccttgttttttcaatgaattcgggctgggctctctg |
2657382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 36587 - 36840
Alignment:
| Q |
12 |
tcttaatgctagactagacacaatagtggttagattctaactattgtttgccttgactttgttaacgttgtatgtttgtttacattttatttttcagatt |
111 |
Q |
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||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36587 |
tcttaatactagactagtcacaatagtggttggattctaactattgtttgccttgactttgttaacattgtatgtttgtttacattttatttttcagatt |
36686 |
T |
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| Q |
112 |
tgttgaacttgttagttgtcatgttctggatttatttcttcaatgaataagttattttggcttgttatttctgcaggtcttttcggcgtcgattcaacct |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
36687 |
tgttgaacttgttagttgtcaagttctggatttatttcttcaatcaataagttattttggcttgttatttctgcaggtcttttcggattagattcaacct |
36786 |
T |
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| Q |
212 |
cagctgtaggaggaattcct-tgttttttcaatgaattcgggctggactctctg |
264 |
Q |
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||| |||||||||||| ||| ||||||||| ||||| | |||||||| |||| |
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| T |
36787 |
cagttgtaggaggaatgcctcatttttttcaaagaatttgtgctggactttctg |
36840 |
T |
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