View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_4 (Length: 733)
Name: NF11897_low_4
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 347 - 715
Target Start/End: Original strand, 30431372 - 30431740
Alignment:
| Q |
347 |
gttatgtattctggaaattctgagatgttattgtgtttgttgtttcagcatattctctgctatctcgcaattcgcaattctgattttggctgtttcgttt |
446 |
Q |
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| T |
30431372 |
gttatgtattctggaaattctgagatgttattgtgtttgttgtttcagcatattctctgctatctcgcaattggcaattctgattttggctgtttcgttt |
30431471 |
T |
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| Q |
447 |
ttatcaaattctgtttgtcaaaggtataattttggattttttataacaattgaattcctatacactatcagtgtaaaatttttacactgtcaattgatca |
546 |
Q |
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| T |
30431472 |
ttctcaaattctgtttgtcaaaggtatgattttggattttttataacaattgaattcctatacactctcagtgtaaaatttttacactgtcaattgatca |
30431571 |
T |
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| Q |
547 |
taatagtcggatcataaaaaatgtttggcttttattatcattgcttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgtaaaactttttat |
646 |
Q |
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| T |
30431572 |
taacagtcggatcataaaaaatgtttggcttttattatcactgcttctaaagtcgaacaaatgactgattatgatgtgtgaaccatgtaaaactttttat |
30431671 |
T |
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| Q |
647 |
accgacggtggatgaaaattaaactctttttatactgattgtgaatttccaatttgtatatgtttagag |
715 |
Q |
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| T |
30431672 |
accgacggtggatgaaaattaaactctttttatattgattgtgaatttccaatttgtatatgtttagag |
30431740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 146 - 307
Target Start/End: Original strand, 30431171 - 30431332
Alignment:
| Q |
146 |
gaagctggagaagagaatggaggtgatttggatcgcattggaatgttgatcactgaattaatcatgtggagagatgtaacaaaatcaaccctttggtttg |
245 |
Q |
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| T |
30431171 |
gaagctggtgaagagaatggaggtgatttggatcgcattggaatgttgatcactgaattaatcatgtggaaagatgtaacaaaatcaaccctttggtttg |
30431270 |
T |
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| Q |
246 |
gttttggatctctttgtttcttatctacatgtttcaccaaaggaatcaattttaggtctgca |
307 |
Q |
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| T |
30431271 |
gttttggatctctttgtttcttatctacatgtttcaccaaaggaatcaattttaggtctgca |
30431332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30431025 - 30431104
Alignment:
| Q |
1 |
agacataagaaggatagacttagtttggtaccttttcaaccaccg-caagaaactttttctccaagtaagactaattcaa |
79 |
Q |
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| T |
30431025 |
agacataagaaggatagacttagtttggtaccttttcaaccaccgccaagaaactttttctccaagtaagactaattcaa |
30431104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 38774637 - 38774704
Alignment:
| Q |
209 |
atgtggagagatgtaacaaaatcaaccctttggtttggttttggatctctttgtttcttatctacatg |
276 |
Q |
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| T |
38774637 |
atgtggaaagatgtaacaaaatcaacgctttggtttggacttggatgtatttgtcttttatcttcatg |
38774704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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