View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11897_low_40 (Length: 214)

Name: NF11897_low_40
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11897_low_40
NF11897_low_40
[»] chr3 (3 HSPs)
chr3 (19-100)||(41454077-41454158)
chr3 (132-201)||(41457673-41457742)
chr3 (88-137)||(41454166-41454215)
[»] chr4 (3 HSPs)
chr4 (88-144)||(28751911-28751967)
chr4 (51-143)||(32737082-32737173)
chr4 (132-201)||(28752034-28752104)
[»] scaffold0020 (1 HSPs)
scaffold0020 (147-201)||(138712-138767)
[»] chr1 (2 HSPs)
chr1 (60-143)||(25060735-25060817)
chr1 (138-201)||(49177811-49177875)
[»] chr5 (1 HSPs)
chr5 (132-201)||(34826586-34826655)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 41454077 - 41454158
Alignment:
Q  19 catgtgatgatacaaccaataatttttaaactaattttgcactcgtttggttgtacgattagaaacctcaaacgtgagttta 100  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  41454077 catgtcatgatacaaccaataatttttaaactaattaagcactcgttaggttgtacgattagaaacctcaaacgtgagttta 41454158  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 41457673 - 41457742
Alignment:
Q  132 ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattttcatctcatt 201  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  41457673 ttcaacttgattagttattttaataataactgctcccaatatccatgtttatccttattttcatttcatt 41457742  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 41454166 - 41454215
Alignment:
Q  88 aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaa 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41454166 aaacgtgagtttattaaaaaatacaagtgtttgggtaaccatttttcaaa 41454215  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 28751911 - 28751967
Alignment:
Q  88 aaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatta 144  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  28751911 aaacgtgagtttattagaaaataaaagtgtttgggtaaccatttttcaaattgatta 28751967  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 32737173 - 32737082
Alignment:
Q  51 aattttgcactcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt 143  Q
    ||||| |||||||||||||||| || ||  ||||||||||||||||||| ||| |||| | |||||||||||||  ||||||| |||||||||    
T  32737173 aatttagcactcgtttggttgtgcgtttgcaaacctcaaacgtgagtttgtta-aaaaaaaaagtgtttgggtactcattttttaaattgatt 32737082  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 28752034 - 28752104
Alignment:
Q  132 ttcaaattgattagatattttaataatagctgctcccaa-tatccatgtttatctttattttcatctcatt 201  Q
    ||||| |||||| | ||||||||||||||||||||| || | |||||||||||| ||| |||||| |||||    
T  28752034 ttcaatttgatttgttattttaataatagctgctcctaactttccatgtttatccttactttcatttcatt 28752104  T

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Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 138767 - 138712
Alignment:
Q  147 tattttaataatagctgctcccaa-tatccatgtttatctttattttcatctcatt 201  Q
    |||||||||||||||||||||||| | |||||||||||| |||||||||| |||||    
T  138767 tattttaataatagctgctcccaattttccatgtttatccttattttcatttcatt 138712  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 25060735 - 25060817
Alignment:
Q  60 ctcgtttggttgtacgattagaaacctcaaacgtgagtttattacaaaatacaagtgtttgggtaaccatttttcaaattgatt 143  Q
    ||||||| ||||| || ||| || |||||||||||||||| ||| |||||| |||||||||| |||||| |||| |||||||||    
T  25060735 ctcgttttgttgtgcgtttacaagcctcaaacgtgagtttgttaaaaaata-aagtgtttggataaccaatttttaaattgatt 25060817  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 49177811 - 49177875
Alignment:
Q  138 ttgattagatattttaataatagctgctcccaa-tatccatgtttatctttattttcatctcatt 201  Q
    |||||| | |||||||||||||||||||||||| | |||||||||||| || ||| ||| |||||    
T  49177811 ttgatttgttattttaataatagctgctcccaattttccatgtttatccttgtttccatttcatt 49177875  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 34826655 - 34826586
Alignment:
Q  132 ttcaaattgattagatattttaataatagctgctcccaatatccatgtttatctttattttcatctcatt 201  Q
    ||||| |||||| | ||||||||| ||||||||||||||| ||| |||||||| |||||| ||| |||||    
T  34826655 ttcaacttgatttgttattttaatgatagctgctcccaatttccttgtttatccttatttccatttcatt 34826586  T

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