View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11897_low_6 (Length: 637)
Name: NF11897_low_6
Description: NF11897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11897_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 405 - 578
Target Start/End: Complemental strand, 19883988 - 19883815
Alignment:
| Q |
405 |
gtgtattgctttatttttattcctttcttcactctcgtggttttatcgttacagctttaaactgagttaaacaacacatatatatgtgacaaaagcaaag |
504 |
Q |
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| T |
19883988 |
gtgtcttgctttatttttattcctttcttcactttcgtgtttttatcgttgcagctttaaactgagtgaaacaacacatatatacgtgacaaaagcaaag |
19883889 |
T |
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| Q |
505 |
tgcaatatgttcaatgttgagtgaaacttaagcttaagcaaaagctatattctttctcactttttgtctttagt |
578 |
Q |
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| T |
19883888 |
tgcaatatgttcagtgttgagtgaaacttaagcttaagcaaaagttacatcctttctcactttttgtctttagt |
19883815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 74 - 265
Target Start/End: Original strand, 20089956 - 20090154
Alignment:
| Q |
74 |
atcttgaggctgaatcatagagttaggatccatttctgaaggttgaaa------------aataagaagaataaggatcaatgagagatgggtagtctag |
161 |
Q |
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| T |
20089956 |
atcttgaggctgaatcatagaattaggattcatttcggaaggttgaaacttaaaaatgaaaataagaagaataaggatcaatgagagatgggtagt---- |
20090051 |
T |
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| Q |
162 |
tggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaatgagaagctatgaatccgatacttcccgtaaagaaaattgata |
261 |
Q |
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| T |
20090052 |
-ggtgctgtaaggaactgagcatatcaagtgcaaacctaattcctttatataaagaatgagaagctatgaatccgatacttcctgtaaagaaaatggata |
20090150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 405 - 617
Target Start/End: Original strand, 20096722 - 20096934
Alignment:
| Q |
405 |
gtgtattgctttatttttattcctttcttcactctcgtggttttatcgttacagctttaaactgagttaaacaacacatatatatgtgacaaaagcaaag |
504 |
Q |
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| T |
20096722 |
gtgtcttgctttatttttattcctttcttcactctcgtgattttatcgttgcagctttaaactgagtgaaacaacacatatat----gacaaaagcaaag |
20096817 |
T |
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| Q |
505 |
tgcaatatgttcaatgttgagtgaaacttaagcttaagcaaaagctatattctttctcactttttgtctttagtttattataaggc----tatcccgtcg |
600 |
Q |
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| T |
20096818 |
tgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagctatattctttctcaccttttgtctctttagcattataaggcttcgtatctcgtcg |
20096917 |
T |
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| Q |
601 |
tgtttctcatggccttg |
617 |
Q |
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| T |
20096918 |
tgtttctcatggccttg |
20096934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 20124446 - 20124654
Alignment:
| Q |
15 |
aaatataaggagagtttagatgtaccatcttgaaagtcataaggtacattttcatatctatcttgaggctgaatcatagagttaggatccatttctgaag |
114 |
Q |
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| T |
20124446 |
aaatataaagagagtttggacgtaccatcttgaaaatcataaggtacatcttcgtcttcatcttgaggctgaatcatagagttatgattcatttcgtaag |
20124545 |
T |
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| Q |
115 |
gttgaa----------aaataagaagaataaggatcaatgagagatgggtagtctagtggtgctgtaaggaactgagcatatcaagtgcaaacctaattc |
204 |
Q |
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| T |
20124546 |
tttgcacttagaatgaaaataacaagaataagtatcaatgagagattgg-----tagtggtgctgtaagaaactgagcacatcaagtgcaaacctaattc |
20124640 |
T |
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| Q |
205 |
ctttatataaagaa |
218 |
Q |
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| T |
20124641 |
cgttatataaagaa |
20124654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 434
Target Start/End: Original strand, 20124891 - 20124921
Alignment:
| Q |
404 |
tgtgtattgctttatttttattcctttcttc |
434 |
Q |
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| T |
20124891 |
tgtgtattgctttatttttattcctttcttc |
20124921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 621
Target Start/End: Original strand, 20124955 - 20125035
Alignment:
| Q |
540 |
aagcaaaagctatattctttctcactttttgtctttagtttattataaggctatcccgtcgtgtttctcatggccttgatgt |
621 |
Q |
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| T |
20124955 |
aagcaaatgatacattctttctcaccatttttcttttgcatattataaggttatcccgtcctgtttctcat-gccttgatgt |
20125035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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